ModCRE DB

Transcription factor

O75346 - ZNF253

Zinc finger protein 253 (Bone marrow zinc finger 1) (BMZF-1) (Zinc finger protein 411)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 499 aa

78 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
M00955_2.00 NN 70+% CisBP ACGTCCTCT 76.4% identity Open · Scan
M07687_2.00 NN 70+% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 71.0% identity Open · Scan
Nearest Neighbor (70% - 40%)76
MotifPredictionSourceDNA bindingSupportLogoActions
M07565_2.00 NN 70-40% CisBP CCTCTGGGGGCTCGTCCA 69.6% identity Open · Scan
M07775_2.00 NN 70-40% CisBP GCCGAAACCCGGG 69.5% identity Open · Scan
M07715_2.00 NN 70-40% CisBP CCGCCGCCGCCGTGG 68.1% identity Open · Scan
M08921_2.00 NN 70-40% CisBP CCTCATTCTTCTTGGACATG 66.9% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 66.8% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 66.2% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 65.8% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 65.0% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 64.7% identity Open · Scan
M08295_2.00 NN 70-40% CisBP CTGCTGGAATCTCCA 64.5% identity Open · Scan
M07586_2.00 NN 70-40% CisBP GGGACCCGGGTGGGGGCGTCCCCC 63.7% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 63.5% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 63.5% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 63.5% identity Open · Scan
MA1599.1 NN 70-40% JASPAR CGGGCCAAGCCCCTAT 62.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 62.3% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 62.3% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 62.3% identity Open · Scan
M08381_2.00 NN 70-40% CisBP ACATTTTGTCCTCCTAGTCCT 62.3% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 61.7% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.0% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 59.7% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 59.2% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 59.0% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 58.1% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 57.2% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 56.9% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 56.3% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 56.0% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 56.0% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 55.8% identity Open · Scan
M07767_2.00 NN 70-40% CisBP AAAAACCCCAGA 55.8% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 55.5% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 55.2% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 55.2% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 55.1% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 55.0% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.0% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 54.9% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 54.7% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 54.6% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 54.6% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 54.3% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 54.3% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 54.3% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 54.0% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 53.8% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 53.8% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 53.8% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 53.7% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 53.6% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 53.6% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 53.2% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 52.9% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 52.6% identity Open · Scan
M04515_2.00 NN 70-40% CisBP TATGCTATAACAAGCAGCCCC 52.5% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 51.7% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 51.7% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 51.6% identity Open · Scan
M07733_2.00 NN 70-40% CisBP TCTTTCTCTCTCTCC 51.6% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 51.6% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 51.5% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 51.0% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 51.0% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 50.9% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 50.8% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 50.5% identity Open · Scan
M01044_2.00 NN 70-40% CisBP TCTCTCTTTC 50.3% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.3% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 50.2% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 50.1% identity Open · Scan
M01199_2.00 NN 70-40% CisBP GCGCCACC 50.0% identity Open · Scan
M01540_2.00 NN 70-40% CisBP CTCCCCC 50.0% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.0% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 50.0% identity Open · Scan
M10391_2.00 NN 70-40% CisBP TACCCCACATTTATTTA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 499 aa
172-251

Region 172-251 0 PWM

Residues
80 aa
Domains
PF00096 · Zinc finger, C2H2 type PF13465 · Zinc-finger double domain
3D models
1 active PDB
Templates
2KMK
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 172-2511 model
Actions
Predicted = Low TFS_O75346:172:251_2kmk_A_1 2kmk 172-251 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
4-44PF01352KRAB boxNo overlap with loaded model regions
172-194PF00096Zinc finger, C2H2 typeoverlaps 172-251
214-239PF13465Zinc-finger double domainoverlaps 172-251
256-278PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
284-306PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
312-334PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
340-362PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
368-390PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
396-418PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
424-446PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
452-474PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions