ModCRE DB

Transcription factor

O75626 - PRDM1

PR domain zinc finger protein 1 (EC 2.1.1.-) (BLIMP-1) (Beta-interferon gene positive regulatory domain I-binding factor) (PR domain-containing protein 1) (Positive regulatory domain I-binding factor 1) (PRDI-BF1) (PRDI-binding factor 1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 825 aa

16 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known16
MotifPredictionSourceDNA bindingSupportLogoActions
MA0508.1 Known JASPAR AGAAAGTGAAAGTGA Direct PWM Open · Scan
MA0508.2 Known JASPAR TCACTTTCAC Direct PWM Open · Scan
MA0508.3 Known JASPAR TTCTTTCTCTT Direct PWM Open · Scan
MA0508.4 Known JASPAR CTTTCTC Direct PWM Open · Scan
M02731_2.00 Known CisBP CACTTTCACTTT Direct PWM Open · Scan
M02874_2.00 Known CisBP TCACTTTCACTTTCT Direct PWM Open · Scan
M04396_2.00 Known CisBP ACACTTTCCCTT Direct PWM Open · Scan
M04397_2.00 Known CisBP CCACTTTCACTT Direct PWM Open · Scan
M07845_2.00 Known CisBP TCACTTTCACTTTCT Direct PWM Open · Scan
M08083_2.00 Known CisBP TCACTTTCAC Direct PWM Open · Scan
M08191_2.00 Known CisBP ACTTTCAC Direct PWM Open · Scan
M08192_2.00 Known CisBP AATCACTTT Direct PWM Open · Scan
M08276_2.00 Known CisBP CTCTCACTTTCTCTT Direct PWM Open · Scan
M08854_2.00 Known CisBP TCACTTTCACTTTC Direct PWM Open · Scan
M09500_2.00 Known CisBP ACTTTCACTTTC Direct PWM Open · Scan
PRDM1_HUMAN.H11MO.0.A Known HOCOMOCO GAAAGTGAAAGTGA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 825 aa
571-714

Region 571-714 0 PWM

Residues
144 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13912 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5V3J
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 571-7141 model
Actions
Predicted = Low TFS_O75626:571:714_5v3j_E_1 5v3j 571-714 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
93-210PF21549PR domain zinc finger protein 2, PR domainNo overlap with loaded model regions
575-597PF00096Zinc finger, C2H2 typeoverlaps 571-714
603-625PF00096Zinc finger, C2H2 typeoverlaps 571-714
631-654PF13912C2H2-type zinc fingeroverlaps 571-714
659-681PF00096Zinc finger, C2H2 typeoverlaps 571-714