ModCRE DB

Transcription factor

O75806 - HOXA-9

Homeobox protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 268 aa

113 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)13
MotifPredictionSourceDNA bindingSupportLogoActions
MA0594.2 NN 70+% JASPAR GTCGTAAACG 90.6% identity Open · Scan
MA0594.1 NN 70+% JASPAR GCCATAAATCA 88.3% identity Open · Scan
M05394_2.00 NN 70+% CisBP GGTCGTAAAAC 78.8% identity Open · Scan
M09170_2.00 NN 70+% CisBP TCATAAATCATC 78.8% identity Open · Scan
MA0899.1 NN 70+% JASPAR GGTAATAAAAA 78.8% identity Open · Scan
M03253_2.00 NN 70+% CisBP TTTTTATTAC 75.3% identity Open · Scan
MA0905.1 NN 70+% JASPAR GTCGTAAAAT 75.3% identity Open · Scan
MA1506.1 NN 70+% JASPAR GGTCGTAAAAC 75.0% identity Open · Scan
M00494_2.00 NN 70+% CisBP TTAATTACC 71.6% identity Open · Scan
MA1497.1 NN 70+% JASPAR GGTAATTAAC 71.6% identity Open · Scan
M00392_2.00 NN 70+% CisBP TTAATTAC 70.1% identity Open · Scan
M09680_2.00 NN 70+% CisBP TTAATTA 70.1% identity Open · Scan
M06549_2.00 NN 70+% CisBP TTAATGA 70.0% identity Open · Scan
Nearest Neighbor (70% - 40%)100
MotifPredictionSourceDNA bindingSupportLogoActions
M02166_2.00 NN 70-40% CisBP CTAATTAC 69.4% identity Open · Scan
M03799_2.00 NN 70-40% CisBP GTAATTAC 68.8% identity Open · Scan
MA0158.1 NN 70-40% JASPAR CACTAATT 68.3% identity Open · Scan
MA0904.1 NN 70-40% JASPAR ACGGTAATTAGCTCAT 68.3% identity Open · Scan
MA0904.2 NN 70-40% JASPAR GTAATTAC 68.3% identity Open · Scan
M00474_2.00 NN 70-40% CisBP TTTATGACC 68.2% identity Open · Scan
MA0911.1 NN 70-40% JASPAR GGTCGTAAAATT 68.2% identity Open · Scan
MA1500.1 NN 70-40% JASPAR TTAATTAC 67.7% identity Open · Scan
M00403_2.00 NN 70-40% CisBP CTAATTACC 67.2% identity Open · Scan
MA0900.1 NN 70-40% JASPAR CCTAATTACC 67.2% identity Open · Scan
M06227_2.00 NN 70-40% CisBP TTAATTAT 66.6% identity Open · Scan
M06261_2.00 NN 70-40% CisBP TTAATTA 66.6% identity Open · Scan
MA0132.1 NN 70-40% JASPAR CTAATT 66.6% identity Open · Scan
MA0132.2 NN 70-40% JASPAR GTAATTAG 66.6% identity Open · Scan
MA0908.1 NN 70-40% JASPAR GTCGTAAAAA 66.6% identity Open · Scan
MA1496.1 NN 70-40% JASPAR GTCATTAG 66.6% identity Open · Scan
M00532_2.00 NN 70-40% CisBP TTAATGACC 66.1% identity Open · Scan
M05312_2.00 NN 70-40% CisBP TTAACGAC 66.1% identity Open · Scan
MA0910.1 NN 70-40% JASPAR TAAATAATTAATGGCTA 65.2% identity Open · Scan
MA0910.2 NN 70-40% JASPAR GCAATTAC 65.2% identity Open · Scan
MA1502.1 NN 70-40% JASPAR GCAATTAC 65.2% identity Open · Scan
M09582_2.00 NN 70-40% CisBP ATGATTGATG 65.1% identity Open · Scan
MA0651.1 NN 70-40% JASPAR GGTCGTAAAAT 65.0% identity Open · Scan
MA1507.1 NN 70-40% JASPAR ATCATTAG 65.0% identity Open · Scan
MA1504.1 NN 70-40% JASPAR GTCATTAA 64.9% identity Open · Scan
M00469_2.00 NN 70-40% CisBP TTAATTACC 64.8% identity Open · Scan
MA0893.1 NN 70-40% JASPAR ACTAATTAAA 64.8% identity Open · Scan
M00391_2.00 NN 70-40% CisBP TTAATTGCC 64.5% identity Open · Scan
MA0902.1 NN 70-40% JASPAR AGTAATTAAC 64.5% identity Open · Scan
MA0912.1 NN 70-40% JASPAR TTGAGTTAATTAACCT 64.5% identity Open · Scan
MA0912.2 NN 70-40% JASPAR CTAATTAC 64.5% identity Open · Scan
MA1505.1 NN 70-40% JASPAR GTAATTAC 64.5% identity Open · Scan
M03104_2.00 NN 70-40% CisBP TTAATTACGGTAATTAC 63.7% identity Open · Scan
M03271_2.00 NN 70-40% CisBP GTAATTAC 63.7% identity Open · Scan
M04959_2.00 NN 70-40% CisBP GTAATTAC 63.7% identity Open · Scan
M09196_2.00 NN 70-40% CisBP TTGATGGATG 63.7% identity Open · Scan
MA0706.1 NN 70-40% JASPAR AGTAATTAAC 63.7% identity Open · Scan
MA1495.1 NN 70-40% JASPAR GTAATTAC 63.7% identity Open · Scan
MA1501.1 NN 70-40% JASPAR GGTAATTAAC 63.7% identity Open · Scan
M09204_2.00 NN 70-40% CisBP TTAATGGC 63.3% identity Open · Scan
MA1499.1 NN 70-40% JASPAR ATCATTAG 63.3% identity Open · Scan
M00492_2.00 NN 70-40% CisBP TAATTAGC 62.9% identity Open · Scan
M05100_2.00 NN 70-40% CisBP TTAACGAC 62.9% identity Open · Scan
MA0903.1 NN 70-40% JASPAR ACTAATTAGC 62.9% identity Open · Scan
MA1498.1 NN 70-40% JASPAR GCAATTAC 62.8% identity Open · Scan
M09206_2.00 NN 70-40% CisBP CATTAATCAA 62.3% identity Open · Scan
MA0661.1 NN 70-40% JASPAR GCTAATTAAC 62.0% identity Open · Scan
M09214_2.00 NN 70-40% CisBP GCATTAATCAA 61.8% identity Open · Scan
M03832_2.00 NN 70-40% CisBP GGTAATTACC 61.6% identity Open · Scan
M03775_2.00 NN 70-40% CisBP GTTTTATGTGTTTT 61.2% identity Open · Scan
M00476_2.00 NN 70-40% CisBP TTAATGGCC 61.1% identity Open · Scan
M02214_2.00 NN 70-40% CisBP AATAATTATA 61.1% identity Open · Scan
M05272_2.00 NN 70-40% CisBP TTAACGAG 61.0% identity Open · Scan
MA0906.1 NN 70-40% JASPAR GGTCGTAAAAA 61.0% identity Open · Scan
M00508_2.00 NN 70-40% CisBP TTTTATGACC 60.9% identity Open · Scan
M02150_2.00 NN 70-40% CisBP TTAATTAA 60.6% identity Open · Scan
M06545_2.00 NN 70-40% CisBP TTAATTA 60.6% identity Open · Scan
M00538_2.00 NN 70-40% CisBP TTTTATGACC 60.3% identity Open · Scan
M05019_2.00 NN 70-40% CisBP GGTCGTAAAAC 60.3% identity Open · Scan
M09186_2.00 NN 70-40% CisBP ACATAAAT 60.3% identity Open · Scan
M10761_2.00 NN 70-40% CisBP CATAAAT 60.3% identity Open · Scan
MA0873.1 NN 70-40% JASPAR AGTCGTAAAAA 60.3% identity Open · Scan
MA0878.1 NN 70-40% JASPAR GCAATAAAA 60.3% identity Open · Scan
M00422_2.00 NN 70-40% CisBP TTAATGA 60.0% identity Open · Scan
M06544_2.00 NN 70-40% CisBP GTAATTA 59.0% identity Open · Scan
MA1473.1 NN 70-40% JASPAR GGCAATAAAAC 59.0% identity Open · Scan
M02211_2.00 NN 70-40% CisBP TTAATTAC 58.4% identity Open · Scan
M00388_2.00 NN 70-40% CisBP CTAATTGCTT 58.3% identity Open · Scan
MA0707.1 NN 70-40% JASPAR GGTAATTAAA 58.3% identity Open · Scan
M02196_2.00 NN 70-40% CisBP TTAATTAC 57.6% identity Open · Scan
M09193_2.00 NN 70-40% CisBP TTTTATGGCCTT 57.5% identity Open · Scan
MA0465.1 NN 70-40% JASPAR AAGCCATAAAA 57.5% identity Open · Scan
M05057_2.00 NN 70-40% CisBP TTAATTAC 57.3% identity Open · Scan
M02205_2.00 NN 70-40% CisBP CATTAATTACC 56.8% identity Open · Scan
M06329_2.00 NN 70-40% CisBP CACTAATTA 56.4% identity Open · Scan
M02081_2.00 NN 70-40% CisBP TTTTATTA 56.1% identity Open · Scan
MA0650.1 NN 70-40% JASPAR CCAATAAAAA 55.7% identity Open · Scan
MA0909.1 NN 70-40% JASPAR CCAATAAAAA 55.7% identity Open · Scan
M06224_2.00 NN 70-40% CisBP ATCATAAAA 55.5% identity Open · Scan
M06264_2.00 NN 70-40% CisBP GCTAATTA 55.0% identity Open · Scan
M06248_2.00 NN 70-40% CisBP TAATTGCC 54.7% identity Open · Scan
M00520_2.00 NN 70-40% CisBP CTTAAGTGCT 54.3% identity Open · Scan
M06323_2.00 NN 70-40% CisBP ATTAATTG 54.0% identity Open · Scan
MA0907.1 NN 70-40% JASPAR GCTCGTAAAAA 54.0% identity Open · Scan
M01245_2.00 NN 70-40% CisBP TTTTATTACC 53.8% identity Open · Scan
MA0889.1 NN 70-40% JASPAR ACTAATTAGC 52.5% identity Open · Scan
M00462_2.00 NN 70-40% CisBP CTAATTG 51.7% identity Open · Scan
MA0890.1 NN 70-40% JASPAR ACCAATTAGC 51.7% identity Open · Scan
M06281_2.00 NN 70-40% CisBP TTAATTA 51.4% identity Open · Scan
M02165_2.00 NN 70-40% CisBP CTTAATTGG 50.9% identity Open · Scan
M00505_2.00 NN 70-40% CisBP TTTTATGAGC 50.8% identity Open · Scan
M06232_2.00 NN 70-40% CisBP TTAATGA 50.8% identity Open · Scan
M06241_2.00 NN 70-40% CisBP CGTTAATTATTT 50.8% identity Open · Scan
M06548_2.00 NN 70-40% CisBP TTAATTG 50.8% identity Open · Scan
MA0618.1 NN 70-40% JASPAR TTAATTAG 50.8% identity Open · Scan
MA0708.1 NN 70-40% JASPAR CCAATTAA 50.8% identity Open · Scan
MA0876.1 NN 70-40% JASPAR CCAATTAA 50.8% identity Open · Scan
MA0887.1 NN 70-40% JASPAR GGTAATTAGC 50.8% identity Open · Scan
MA0901.1 NN 70-40% JASPAR CCAATAAAAC 50.8% identity Open · Scan
M06286_2.00 NN 70-40% CisBP CTTAAGTG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 268 aa
196-259

Region 196-259 0 PWM

Residues
64 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
5ZJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 196-2591 model
Actions
Predicted = Low DIMER_O75806:196:259_5zjq_A_1 5zjq 196-259 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
6-189PF04617Hox9 activation regionNo overlap with loaded model regions
203-259PF00046Homeodomainoverlaps 196-259