ModCRE DB

Transcription factor

O95129 - SOX25

SOX-25 protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 54 aa

36 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)13
MotifPredictionSourceDNA bindingSupportLogoActions
MA0866.1 NN 70+% JASPAR AACAATGGTAGTGTT 98.1% identity Open · Scan
MA0142.1 NN 70+% JASPAR CTTTGTTATGCAAAT 92.5% identity Open · Scan
MA0143.4 NN 70+% JASPAR AAACAATGGAA 92.5% identity Open · Scan
MA1562.1 NN 70+% JASPAR CCGAACAATG 92.5% identity Open · Scan
M03979_2.00 NN 70+% CisBP AAACAATAACATTGTTT 90.7% identity Open · Scan
M03983_2.00 NN 70+% CisBP AAACAATTTCAGTGTTT 90.7% identity Open · Scan
MA0870.1 NN 70+% JASPAR AACAATAACATTGTT 88.8% identity Open · Scan
M03538_2.00 NN 70+% CisBP AAACAATGACATTGTTT 88.6% identity Open · Scan
M05769_2.00 NN 70+% CisBP CCATTGTGAG 88.6% identity Open · Scan
MA0514.1 NN 70+% JASPAR CCTTTGTTTT 88.6% identity Open · Scan
M09694_2.00 NN 70+% CisBP AACAATGGAC 87.0% identity Open · Scan
M03508_2.00 NN 70+% CisBP AACAATAACATTGTT 78.8% identity Open · Scan
MA1152.1 NN 70+% JASPAR CTATTGTTTT 78.8% identity Open · Scan
Nearest Neighbor (70% - 40%)23
MotifPredictionSourceDNA bindingSupportLogoActions
MA0084.1 NN 70-40% JASPAR GTAAACAAT 68.0% identity Open · Scan
M03533_2.00 NN 70-40% CisBP AACAATTGCATTGTT 63.3% identity Open · Scan
M09408_2.00 NN 70-40% CisBP TTTTGTTTT 62.0% identity Open · Scan
M09410_2.00 NN 70-40% CisBP TCCTTTGTTCTC 60.7% identity Open · Scan
MA0867.1 NN 70-40% JASPAR GAACAATTGCAGTGTT 60.7% identity Open · Scan
MA0869.1 NN 70-40% JASPAR AACAATTTCAGTGTT 60.7% identity Open · Scan
M00197_2.00 NN 70-40% CisBP AAAACAAT 59.2% identity Open · Scan
M03537_2.00 NN 70-40% CisBP ATGAATTGCAGTCAT 59.2% identity Open · Scan
MA0077.1 NN 70-40% JASPAR CCATTGTTC 59.2% identity Open · Scan
MA0442.1 NN 70-40% JASPAR CTTTGT 59.2% identity Open · Scan
MA0868.1 NN 70-40% JASPAR AACAATGTGCAGTGTT 59.2% identity Open · Scan
MA0078.1 NN 70-40% JASPAR CTCATTGTC 58.8% identity Open · Scan
MA1561.1 NN 70-40% JASPAR ACCGAACAATG 58.8% identity Open · Scan
M03516_2.00 NN 70-40% CisBP AACAATGTTCATTGTT 58.3% identity Open · Scan
M02488_2.00 NN 70-40% CisBP CATTGTTTTC 54.7% identity Open · Scan
M00204_2.00 NN 70-40% CisBP AAAACAAT 52.9% identity Open · Scan
MA1563.1 NN 70-40% JASPAR CACAATGC 52.9% identity Open · Scan
M00212_2.00 NN 70-40% CisBP GAACAATA 52.0% identity Open · Scan
M09404_2.00 NN 70-40% CisBP TAACAATA 52.0% identity Open · Scan
M11309_2.00 NN 70-40% CisBP TTAACAATAC 52.0% identity Open · Scan
MA0087.1 NN 70-40% JASPAR ATTGTTA 52.0% identity Open · Scan
MA1120.1 NN 70-40% JASPAR AAACAATGGCA 52.0% identity Open · Scan
M03974_2.00 NN 70-40% CisBP AACAATAACATTGTT 50.9% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 54 aa
1-54

Region 1-54 0 PWM

Residues
54 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
1 active PDB
Templates
1GT0
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1-541 model
Actions
Predicted = Low TFS_O95129:1:54_1gt0_D_1 1gt0 1-54 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
2-54PF00505HMG (high mobility group) boxoverlaps 1-54