ModCRE DB

Transcription factor

O95130 - SOX26

SOX-26 protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 54 aa

38 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)13
MotifPredictionSourceDNA bindingSupportLogoActions
M03508_2.00 NN 70+% CisBP AACAATAACATTGTT 92.5% identity Open · Scan
MA1152.1 NN 70+% JASPAR CTATTGTTTT 92.5% identity Open · Scan
MA0142.1 NN 70+% JASPAR CTTTGTTATGCAAAT 81.4% identity Open · Scan
MA0143.4 NN 70+% JASPAR AAACAATGGAA 81.4% identity Open · Scan
M03538_2.00 NN 70+% CisBP AAACAATGACATTGTTT 79.6% identity Open · Scan
M05769_2.00 NN 70+% CisBP CCATTGTGAG 79.6% identity Open · Scan
MA0514.1 NN 70+% JASPAR CCTTTGTTTT 79.6% identity Open · Scan
MA0866.1 NN 70+% JASPAR AACAATGGTAGTGTT 79.6% identity Open · Scan
MA1562.1 NN 70+% JASPAR CCGAACAATG 79.6% identity Open · Scan
M03979_2.00 NN 70+% CisBP AAACAATAACATTGTTT 77.7% identity Open · Scan
MA0870.1 NN 70+% JASPAR AACAATAACATTGTT 77.7% identity Open · Scan
M03983_2.00 NN 70+% CisBP AAACAATTTCAGTGTTT 75.9% identity Open · Scan
M09694_2.00 NN 70+% CisBP AACAATGGAC 72.2% identity Open · Scan
Nearest Neighbor (70% - 40%)25
MotifPredictionSourceDNA bindingSupportLogoActions
MA0084.1 NN 70-40% JASPAR GTAAACAAT 64.8% identity Open · Scan
M00197_2.00 NN 70-40% CisBP AAAACAAT 60.0% identity Open · Scan
M03533_2.00 NN 70-40% CisBP AACAATTGCATTGTT 60.0% identity Open · Scan
MA0077.1 NN 70-40% JASPAR CCATTGTTC 60.0% identity Open · Scan
MA0868.1 NN 70-40% JASPAR AACAATGTGCAGTGTT 60.0% identity Open · Scan
M09408_2.00 NN 70-40% CisBP TTTTGTTTT 59.2% identity Open · Scan
M00204_2.00 NN 70-40% CisBP AAAACAAT 58.8% identity Open · Scan
MA1563.1 NN 70-40% JASPAR CACAATGC 58.8% identity Open · Scan
MA1561.1 NN 70-40% JASPAR ACCGAACAATG 57.4% identity Open · Scan
M09410_2.00 NN 70-40% CisBP TCCTTTGTTCTC 56.8% identity Open · Scan
MA0078.1 NN 70-40% JASPAR CTCATTGTC 56.8% identity Open · Scan
MA0867.1 NN 70-40% JASPAR GAACAATTGCAGTGTT 56.8% identity Open · Scan
M03537_2.00 NN 70-40% CisBP ATGAATTGCAGTCAT 56.0% identity Open · Scan
MA0442.1 NN 70-40% JASPAR CTTTGT 56.0% identity Open · Scan
MA0869.1 NN 70-40% JASPAR AACAATTTCAGTGTT 55.5% identity Open · Scan
M02488_2.00 NN 70-40% CisBP CATTGTTTTC 51.8% identity Open · Scan
M00212_2.00 NN 70-40% CisBP GAACAATA 50.9% identity Open · Scan
M03516_2.00 NN 70-40% CisBP AACAATGTTCATTGTT 50.9% identity Open · Scan
M05892_2.00 NN 70-40% CisBP AAACAATAGA 50.9% identity Open · Scan
M09404_2.00 NN 70-40% CisBP TAACAATA 50.9% identity Open · Scan
M11309_2.00 NN 70-40% CisBP TTAACAATAC 50.9% identity Open · Scan
MA0087.1 NN 70-40% JASPAR ATTGTTA 50.9% identity Open · Scan
MA0515.1 NN 70-40% JASPAR CCATTGTTTT 50.9% identity Open · Scan
MA1120.1 NN 70-40% JASPAR AAACAATGGCA 50.9% identity Open · Scan
M03974_2.00 NN 70-40% CisBP AACAATAACATTGTT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 54 aa
1-54

Region 1-54 0 PWM

Residues
54 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
1 active PDB
Templates
1GT0
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1-541 model
Actions
Predicted = Low TFS_O95130:1:54_1gt0_D_1 1gt0 1-54 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
2-54PF00505HMG (high mobility group) boxoverlaps 1-54