ModCRE DB

Transcription factor

O95131 - SOX27

SOX-27 protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 54 aa

29 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)13
MotifPredictionSourceDNA bindingSupportLogoActions
M03508_2.00 NN 70+% CisBP AACAATAACATTGTT 86.5% identity Open · Scan
MA1152.1 NN 70+% JASPAR CTATTGTTTT 86.5% identity Open · Scan
MA1562.1 NN 70+% JASPAR CCGAACAATG 85.1% identity Open · Scan
MA0866.1 NN 70+% JASPAR AACAATGGTAGTGTT 83.3% identity Open · Scan
M03983_2.00 NN 70+% CisBP AAACAATTTCAGTGTTT 82.3% identity Open · Scan
M09694_2.00 NN 70+% CisBP AACAATGGAC 82.3% identity Open · Scan
M03979_2.00 NN 70+% CisBP AAACAATAACATTGTTT 81.4% identity Open · Scan
MA0142.1 NN 70+% JASPAR CTTTGTTATGCAAAT 81.4% identity Open · Scan
MA0143.4 NN 70+% JASPAR AAACAATGGAA 81.4% identity Open · Scan
MA0870.1 NN 70+% JASPAR AACAATAACATTGTT 77.7% identity Open · Scan
M03538_2.00 NN 70+% CisBP AAACAATGACATTGTTT 77.3% identity Open · Scan
M05769_2.00 NN 70+% CisBP CCATTGTGAG 77.3% identity Open · Scan
MA0514.1 NN 70+% JASPAR CCTTTGTTTT 77.3% identity Open · Scan
Nearest Neighbor (70% - 40%)16
MotifPredictionSourceDNA bindingSupportLogoActions
MA0084.1 NN 70-40% JASPAR GTAAACAAT 59.5% identity Open · Scan
M03516_2.00 NN 70-40% CisBP AACAATGTTCATTGTT 58.3% identity Open · Scan
M09410_2.00 NN 70-40% CisBP TCCTTTGTTCTC 58.3% identity Open · Scan
MA0867.1 NN 70-40% JASPAR GAACAATTGCAGTGTT 58.3% identity Open · Scan
M03537_2.00 NN 70-40% CisBP ATGAATTGCAGTCAT 57.6% identity Open · Scan
MA0442.1 NN 70-40% JASPAR CTTTGT 57.6% identity Open · Scan
MA0869.1 NN 70-40% JASPAR AACAATTTCAGTGTT 56.2% identity Open · Scan
M00197_2.00 NN 70-40% CisBP AAAACAAT 55.7% identity Open · Scan
MA0077.1 NN 70-40% JASPAR CCATTGTTC 55.7% identity Open · Scan
MA0868.1 NN 70-40% JASPAR AACAATGTGCAGTGTT 55.7% identity Open · Scan
MA0078.1 NN 70-40% JASPAR CTCATTGTC 54.9% identity Open · Scan
MA1561.1 NN 70-40% JASPAR ACCGAACAATG 54.1% identity Open · Scan
M09408_2.00 NN 70-40% CisBP TTTTGTTTT 54.0% identity Open · Scan
M03533_2.00 NN 70-40% CisBP AACAATTGCATTGTT 53.3% identity Open · Scan
M00204_2.00 NN 70-40% CisBP AAAACAAT 50.9% identity Open · Scan
MA1563.1 NN 70-40% JASPAR CACAATGC 50.9% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 54 aa
1-54

Region 1-54 0 PWM

Residues
54 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
1 active PDB
Templates
1GT0
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1-541 model
Actions
Predicted = Low TFS_O95131:1:54_1gt0_D_1 1gt0 1-54 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
1-54PF00505HMG (high mobility group) boxoverlaps 1-54