ModCRE DB

Transcription factor

O95132 - SOX28

SOX-28 protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 54 aa

38 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)13
MotifPredictionSourceDNA bindingSupportLogoActions
MA1562.1 NN 70+% JASPAR CCGAACAATG 96.0% identity Open · Scan
MA0142.1 NN 70+% JASPAR CTTTGTTATGCAAAT 90.1% identity Open · Scan
MA0143.4 NN 70+% JASPAR AAACAATGGAA 90.1% identity Open · Scan
MA0870.1 NN 70+% JASPAR AACAATAACATTGTT 88.2% identity Open · Scan
MA0866.1 NN 70+% JASPAR AACAATGGTAGTGTT 86.2% identity Open · Scan
M03538_2.00 NN 70+% CisBP AAACAATGACATTGTTT 84.3% identity Open · Scan
M03979_2.00 NN 70+% CisBP AAACAATAACATTGTTT 84.3% identity Open · Scan
M03983_2.00 NN 70+% CisBP AAACAATTTCAGTGTTT 84.3% identity Open · Scan
M05769_2.00 NN 70+% CisBP CCATTGTGAG 84.3% identity Open · Scan
MA0514.1 NN 70+% JASPAR CCTTTGTTTT 84.3% identity Open · Scan
M09694_2.00 NN 70+% CisBP AACAATGGAC 80.3% identity Open · Scan
M03508_2.00 NN 70+% CisBP AACAATAACATTGTT 72.5% identity Open · Scan
MA1152.1 NN 70+% JASPAR CTATTGTTTT 72.5% identity Open · Scan
Nearest Neighbor (70% - 40%)25
MotifPredictionSourceDNA bindingSupportLogoActions
M03533_2.00 NN 70-40% CisBP AACAATTGCATTGTT 62.9% identity Open · Scan
MA0084.1 NN 70-40% JASPAR GTAAACAAT 62.0% identity Open · Scan
M09408_2.00 NN 70-40% CisBP TTTTGTTTT 60.0% identity Open · Scan
M00197_2.00 NN 70-40% CisBP AAAACAAT 58.6% identity Open · Scan
MA0868.1 NN 70-40% JASPAR AACAATGTGCAGTGTT 58.6% identity Open · Scan
M03537_2.00 NN 70-40% CisBP ATGAATTGCAGTCAT 56.5% identity Open · Scan
MA0077.1 NN 70-40% JASPAR CCATTGTTC 56.5% identity Open · Scan
MA0442.1 NN 70-40% JASPAR CTTTGT 56.5% identity Open · Scan
M09410_2.00 NN 70-40% CisBP TCCTTTGTTCTC 56.2% identity Open · Scan
MA0078.1 NN 70-40% JASPAR CTCATTGTC 56.2% identity Open · Scan
MA0867.1 NN 70-40% JASPAR GAACAATTGCAGTGTT 56.2% identity Open · Scan
MA0869.1 NN 70-40% JASPAR AACAATTTCAGTGTT 54.9% identity Open · Scan
M00204_2.00 NN 70-40% CisBP AAAACAAT 54.1% identity Open · Scan
M03516_2.00 NN 70-40% CisBP AACAATGTTCATTGTT 54.1% identity Open · Scan
M03981_2.00 NN 70-40% CisBP ATTGTTCGGTGGT 54.1% identity Open · Scan
MA1563.1 NN 70-40% JASPAR CACAATGC 54.1% identity Open · Scan
MA1561.1 NN 70-40% JASPAR ACCGAACAATG 52.9% identity Open · Scan
M00212_2.00 NN 70-40% CisBP GAACAATA 52.0% identity Open · Scan
M05892_2.00 NN 70-40% CisBP AAACAATAGA 52.0% identity Open · Scan
M09404_2.00 NN 70-40% CisBP TAACAATA 52.0% identity Open · Scan
M11309_2.00 NN 70-40% CisBP TTAACAATAC 52.0% identity Open · Scan
MA0087.1 NN 70-40% JASPAR ATTGTTA 52.0% identity Open · Scan
MA0515.1 NN 70-40% JASPAR CCATTGTTTT 52.0% identity Open · Scan
MA1120.1 NN 70-40% JASPAR AAACAATGGCA 52.0% identity Open · Scan
M03974_2.00 NN 70-40% CisBP AACAATAACATTGTT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 54 aa
1-50

Region 1-50 0 PWM

Residues
50 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
1 active PDB
Templates
1HRY
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1-501 model
Actions
Predicted = Low TFS_O95132:1:50_1hry_A_1 1hry 1-50 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
2-53PF00505HMG (high mobility group) boxoverlaps 1-50