Region 6-52 5 PWM
- Residues
- 47 aa
- Domains
- PF01429 · Methyl-CpG binding domain
- 3D models
- 5 active PDBs · 5 summary rows
- Templates
- 3C2I, 5BT2, 6C1Y, 6OGJ, 6OGK
- Sources
- Predicted = Low
Transcription factor
O95983 - MBD3
Methyl-CpG-binding domain protein 3 (Methyl-CpG-binding protein MBD3)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 291 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE5
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_sp_O95983_MBD3_HUMAN:6:52_3c2i_A_1 | ModCRE | Homology model | CCCCGGGTTCC | Region 6-52 · 1 3D model | Open · Scan | |
| TFS_sp_O95983_MBD3_HUMAN:6:52_5bt2_A_1 | ModCRE | Homology model | ACCCCGGGTCT | Region 6-52 · 1 3D model | Open · Scan | |
| TFS_sp_O95983_MBD3_HUMAN:6:52_6c1y_A_1 | ModCRE | Homology model | CGACCCTGGGG | Region 6-52 · 1 3D model | Open · Scan | |
| TFS_sp_O95983_MBD3_HUMAN:6:52_6ogj_A_1 | ModCRE | Homology model | CACCCAATGAG | Region 6-52 · 1 3D model | Open · Scan | |
| TFS_sp_O95983_MBD3_HUMAN:6:52_6ogk_A_1 | ModCRE | Homology model | CTACCCAGT | Region 6-52 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
291 aa
6-52
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models
5 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 6-525 models · 5 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_sp_O95983_MBD3_HUMAN:6:52_3c2i_A_1 | 3c2i | 6-52 | View model · PDB |
| Predicted = Low | TFS_sp_O95983_MBD3_HUMAN:6:52_5bt2_A_1 | 5bt2 | 6-52 | View model · PDB |
| Predicted = Low | TFS_sp_O95983_MBD3_HUMAN:6:52_6c1y_A_1 | 6c1y | 6-52 | View model · PDB |
| Predicted = Low | TFS_sp_O95983_MBD3_HUMAN:6:52_6ogj_A_1 | 6ogj | 6-52 | View model · PDB |
| Predicted = Low | TFS_sp_O95983_MBD3_HUMAN:6:52_6ogk_A_1 | 6ogk | 6-52 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 6c1y | 6:53 | 6 | 52 | P:A · DNA:C,D | 48.9% / 66.0% | 66 | View · PDB TFS_sp_O95983_MBD3_HUMAN:6:52_6c1y_A_1 |
| 2 | 3c2i | 6:53 | 6 | 52 | P:A · DNA:B,C | 48.9% / 66.0% | 65 | View · PDB TFS_sp_O95983_MBD3_HUMAN:6:52_3c2i_A_1 |
| 3 | 5bt2 | 6:53 | 6 | 52 | P:A · DNA:B,C | 48.9% / 66.0% | 66 | View · PDB TFS_sp_O95983_MBD3_HUMAN:6:52_5bt2_A_1 |
| 4 | 6ogj | 6:53 | 6 | 52 | P:A · DNA:C,D | 48.9% / 66.0% | 61 | View · PDB TFS_sp_O95983_MBD3_HUMAN:6:52_6ogj_A_1 |
| 5 | 6ogk | 6:53 | 6 | 52 | P:A · DNA:C,D | 48.9% / 66.0% | 61 | View · PDB TFS_sp_O95983_MBD3_HUMAN:6:52_6ogk_A_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 1-69 | PF01429 | Methyl-CpG binding domain | overlaps 6-52 |
| 79-148 | PF16564 | p55-binding region of Methyl-CpG-binding domain proteins MBD | No overlap with loaded model regions |
| 153-243 | PF14048 | C-terminal domain of methyl-CpG binding protein 2 and 3 | No overlap with loaded model regions |