ModCRE DB

Transcription factor

P09016 - HOXD4

Homeobox protein Hox-D4 (Homeobox protein HHO.C13) (Homeobox protein Hox-4B) (Homeobox protein Hox-5.1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 255 aa

8 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known8
MotifPredictionSourceDNA bindingSupportLogoActions
MA1507.1 Known JASPAR ATCATTAG Direct PWM Open · Scan
MA1507.2 Known JASPAR TCATTA Direct PWM Open · Scan
M05273_2.00 Known CisBP CTAATTAC Direct PWM Open · Scan
M05274_2.00 Known CisBP CTAATGAC Direct PWM Open · Scan
M05275_2.00 Known CisBP CTAATGAT Direct PWM Open · Scan
M05276_2.00 Known CisBP CTAATGAT Direct PWM Open · Scan
M05277_2.00 Known CisBP CTAATGAC Direct PWM Open · Scan
M05278_2.00 Known CisBP TTAATGAT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 255 aa
128-214

Region 128-214 0 PWM

Residues
87 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
2R5Y
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 128-2141 model
Actions
Predicted = Low DIMER_P09016:128:214_2r5y_A_1 2r5y 128-214 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
155-211PF00046Homeodomainoverlaps 128-214