ModCRE DB

Transcription factor

P0C7X2 - ZNF688

Zinc finger protein 688

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 276 aa

62 Generated PWM 10 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)52
MotifPredictionSourceDNA bindingSupportLogoActions
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 65.0% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 62.9% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 61.9% identity Open · Scan
M07701_2.00 NN 70-40% CisBP CCTGGGCTAGGCCCTGGC 61.9% identity Open · Scan
M07754_2.00 NN 70-40% CisBP CGCCCCCTCCCT 61.9% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 61.6% identity Open · Scan
M07688_2.00 NN 70-40% CisBP GAGCCCCAAGCA 58.3% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 58.0% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 57.6% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 57.3% identity Open · Scan
M07775_2.00 NN 70-40% CisBP GCCGAAACCCGGG 57.1% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 57.1% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 56.4% identity Open · Scan
M07767_2.00 NN 70-40% CisBP AAAAACCCCAGA 56.4% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 56.4% identity Open · Scan
M07565_2.00 NN 70-40% CisBP CCTCTGGGGGCTCGTCCA 56.1% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 56.1% identity Open · Scan
M07628_2.00 NN 70-40% CisBP AGTGGTTCTGCTTCT 56.0% identity Open · Scan
M07674_2.00 NN 70-40% CisBP AAATCCTTGACAATCAAGGGTTCCCTCAC 55.7% identity Open · Scan
M00774_2.00 NN 70-40% CisBP TTAGTATACACAAGT 55.3% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 54.8% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 54.8% identity Open · Scan
MA0130.1 NN 70-40% JASPAR ATCCAC 54.5% identity Open · Scan
M07687_2.00 NN 70-40% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 54.3% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 53.9% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 53.9% identity Open · Scan
M07634_2.00 NN 70-40% CisBP AAACGTCCACG 53.4% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 52.6% identity Open · Scan
M02913_2.00 NN 70-40% CisBP TTCGTGGCATTTTTCTA 52.5% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 52.4% identity Open · Scan
M07662_2.00 NN 70-40% CisBP CCTGTGTCCTCCCTGGTCCCC 52.3% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 52.3% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 52.3% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 51.9% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 51.6% identity Open · Scan
M07750_2.00 NN 70-40% CisBP CTTCTGACACCA 51.6% identity Open · Scan
MA1599.1 NN 70-40% JASPAR CGGGCCAAGCCCCTAT 51.6% identity Open · Scan
M08921_2.00 NN 70-40% CisBP CCTCATTCTTCTTGGACATG 51.4% identity Open · Scan
M07627_2.00 NN 70-40% CisBP CAGTCACCTTCTGG 51.2% identity Open · Scan
M07756_2.00 NN 70-40% CisBP GCGGCA 50.8% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 50.8% identity Open · Scan
MA1583.1 NN 70-40% JASPAR GCATTGCCGCAGT 50.8% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 50.7% identity Open · Scan
M07715_2.00 NN 70-40% CisBP CCGCCGCCGCCGTGG 50.7% identity Open · Scan
MA1597.1 NN 70-40% JASPAR CCCAGGGAAGCCATTTC 50.7% identity Open · Scan
M02673_2.00 NN 70-40% CisBP GAACCCCCA 50.0% identity Open · Scan
M07586_2.00 NN 70-40% CisBP GGGACCCGGGTGGGGGCGTCCCCC 50.0% identity Open · Scan
M07595_2.00 NN 70-40% CisBP GCCTGTTCCTCTCCC 50.0% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 50.0% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 50.0% identity Open · Scan
M07685_2.00 NN 70-40% CisBP CTTTCCAGCCAC 50.0% identity Open · Scan
M08381_2.00 NN 70-40% CisBP ACATTTTGTCCTCCTAGTCCT 50.0% identity Open · Scan
ModCRE10
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_P0C7X2_ZN688_HUMAN:185:230_1llm_D_1 ModCRE Homology model ACGCGCCGCGGG Region 185-230 · 1 3D model Open · Scan
TFS_sp_P0C7X2_ZN688_HUMAN:179:233_2i13_A_1 ModCRE Homology model TCTCTCTAGTAAT Region 179-233 · 1 3D model Open · Scan
TFS_sp_P0C7X2_ZN688_HUMAN:179:233_5egb_A_1 ModCRE Homology model AAGGCCGGCCCCCGG Region 179-233 · 1 3D model Open · Scan
TFS_sp_P0C7X2_ZN688_HUMAN:179:233_5eh2_F_1 ModCRE Homology model CAAGGCGGGCCCCGG Region 179-233 · 1 3D model Open · Scan
TFS_sp_P0C7X2_ZN688_HUMAN:179:233_5ei9_E_1 ModCRE Homology model AAACCCCCCCCCCGG Region 179-233 · 1 3D model Open · Scan
TFS_sp_P0C7X2_ZN688_HUMAN:180:235_4gzn_C_1 ModCRE Homology model ACTGGAAGTA Region 180-235 · 1 3D model Open · Scan
TFS_sp_P0C7X2_ZN688_HUMAN:180:235_4m9v_C_1 ModCRE Homology model ACTGGAGGTA Region 180-235 · 1 3D model Open · Scan
TFS_sp_P0C7X2_ZN688_HUMAN:182:233_8a4i_I_1 ModCRE Homology model AGGTTTCGCGC Region 182-233 · 1 3D model Open · Scan
TFS_sp_P0C7X2_ZN688_HUMAN:183:233_5yj3_C_1 ModCRE Homology model GTTCA Region 183-233 · 1 3D model Open · Scan
TFS_sp_P0C7X2_ZN688_HUMAN:185:233_2kmk_A_1 ModCRE Homology model GCCCGGCAGACGCCT Region 185-233 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 276 aa
179-235

Region 179-235 10 PWM

Residues
57 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
10 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 2KMK, 4GZN, 4M9V, 5EGB, 5EH2, 5EI9, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
10 active PDB models 6 summary rows
Region 179-23510 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_P0C7X2_ZN688_HUMAN:185:230_1llm_D_1 1llm 185-230 View model · PDB
Predicted = Low TFS_sp_P0C7X2_ZN688_HUMAN:179:233_2i13_A_1 2i13 179-233 View model · PDB
Predicted = Low TFS_sp_P0C7X2_ZN688_HUMAN:179:233_5egb_A_1 5egb 179-233 View model · PDB
Predicted = Low TFS_sp_P0C7X2_ZN688_HUMAN:179:233_5eh2_F_1 5eh2 179-233 View model · PDB
Predicted = Low TFS_sp_P0C7X2_ZN688_HUMAN:179:233_5ei9_E_1 5ei9 179-233 View model · PDB
Predicted = Low TFS_sp_P0C7X2_ZN688_HUMAN:180:235_4gzn_C_1 4gzn 180-235 View model · PDB
Predicted = Low TFS_sp_P0C7X2_ZN688_HUMAN:180:235_4m9v_C_1 4m9v 180-235 View model · PDB
Predicted = Low TFS_sp_P0C7X2_ZN688_HUMAN:182:233_8a4i_I_1 8a4i 182-233 View model · PDB
Predicted = Low TFS_sp_P0C7X2_ZN688_HUMAN:183:233_5yj3_C_1 5yj3 183-233 View model · PDB
Predicted = Low TFS_sp_P0C7X2_ZN688_HUMAN:185:233_2kmk_A_1 2kmk 185-233 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
2 5ei9 169:235 179 233 P:E · DNA:A,B 45.5% / 63.6% 49 View · PDB TFS_sp_P0C7X2_ZN688_HUMAN:179:233_5ei9_E_1
3 5egb 169:235 179 233 P:A · DNA:C,D 45.5% / 63.6% 49 View · PDB TFS_sp_P0C7X2_ZN688_HUMAN:179:233_5egb_A_1
4 5eh2 169:235 179 233 P:F · DNA:C,D 45.5% / 63.6% 50 View · PDB TFS_sp_P0C7X2_ZN688_HUMAN:179:233_5eh2_F_1
5 8a4i 169:235 182 233 P:I · DNA:A,B 42.3% / 55.8% 96 View · PDB TFS_sp_P0C7X2_ZN688_HUMAN:182:233_8a4i_I_1
1 2i13 169:235 179 233 P:A · DNA:C,D 41.8% / 65.5% 36 View · PDB TFS_sp_P0C7X2_ZN688_HUMAN:179:233_2i13_A_1
1 1llm 169:235 185,185 230,230 P:C,D · DNA:A,B 39.1% / 54.3% 52,54 View · PDB DIMER_sp_P0C7X2_ZN688_HUMAN:185:230_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
26-66PF01352KRAB boxNo overlap with loaded model regions
183-205PF00096Zinc finger, C2H2 typeoverlaps 179-235
211-230PF00096Zinc finger, C2H2 typeoverlaps 179-235