ModCRE DB

Transcription factor

P0CJ78 - ZNF865

Zinc finger protein 865

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1059 aa

17 Generated PWM 16 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)7
MotifPredictionSourceDNA bindingSupportLogoActions
M08525_2.00 NN 70-40% CisBP CCCCGCA 53.5% identity Open · Scan
M10391_2.00 NN 70-40% CisBP TACCCCACATTTATTTA 53.5% identity Open · Scan
M06120_2.00 NN 70-40% CisBP TCATTCACA 52.9% identity Open · Scan
M01470_2.00 NN 70-40% CisBP CCCCCCGC 50.9% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 50.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 50.0% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 50.0% identity Open · Scan
ModCRE10
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_P0CJ78_ZN865_HUMAN:221:279_5egb_A_1 ModCRE Homology model GCCCCCTCGGGG Region 221-279 · 1 3D model Open · Scan
TFS_sp_P0CJ78_ZN865_HUMAN:221:279_5ei9_E_1 ModCRE Homology model GCCACCCGGGGA Region 221-279 · 1 3D model Open · Scan
TFS_sp_P0CJ78_ZN865_HUMAN:222:274_2kmk_A_1 ModCRE Homology model TCCCCCCCCCACGA Region 222-274 · 1 3D model Open · Scan
TFS_sp_P0CJ78_ZN865_HUMAN:224:274_6e94_A_1 ModCRE Homology model GGAGGGGGGGCCC Region 224-274 · 1 3D model Open · Scan
TFS_sp_P0CJ78_ZN865_HUMAN:224:278_1llm_D_1 ModCRE Homology model ACGGGGCGAAA Region 224-278 · 1 3D model Open · Scan
TFS_sp_P0CJ78_ZN865_HUMAN:226:274_3uk3_C_1 ModCRE Homology model CAAGATGTGTC Region 226-274 · 1 3D model Open · Scan
TFS_sp_P0CJ78_ZN865_HUMAN:226:274_3uk3_D_1 ModCRE Homology model GATGCATCTG Region 226-274 · 1 3D model Open · Scan
TFS_sp_P0CJ78_ZN865_HUMAN:226:274_4is1_C_1 ModCRE Homology model CCGGATGTGCA Region 226-274 · 1 3D model Open · Scan
TFS_sp_P0CJ78_ZN865_HUMAN:226:274_4is1_D_1 ModCRE Homology model GAACATGATG Region 226-274 · 1 3D model Open · Scan
TFS_sp_P0CJ78_ZN865_HUMAN:226:277_5yj3_C_1 ModCRE Homology model TTTCC Region 226-277 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1059 aa
221-279
349-396
792-1042

Region 221-279 10 PWM

Residues
59 aa
Domains
PF00096 · Zinc finger, C2H2 type PF13912 · C2H2-type zinc finger
3D models
10 active PDBs
Templates
1LLM, 2KMK, 3UK3, 4IS1, 5EGB, 5EI9, 5YJ3, 6E94
Sources
Predicted = Low
Scan this region Show models

Region 349-396 0 PWM

Residues
48 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB · 1 summary row
Templates
1LLM
Sources
Predicted = Low
Scan this region Show models

Region 792-1042 0 PWM

Residues
251 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
5 active PDBs · 5 summary rows
Templates
2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
16 active PDB models 6 summary rows
Region 221-27910 models
Actions
Predicted = Low TFS_sp_P0CJ78_ZN865_HUMAN:221:279_5egb_A_1 5egb 221-279 View model · PDB
Predicted = Low TFS_sp_P0CJ78_ZN865_HUMAN:221:279_5ei9_E_1 5ei9 221-279 View model · PDB
Predicted = Low TFS_sp_P0CJ78_ZN865_HUMAN:222:274_2kmk_A_1 2kmk 222-274 View model · PDB
Predicted = Low TFS_sp_P0CJ78_ZN865_HUMAN:224:274_6e94_A_1 6e94 224-274 View model · PDB
Predicted = Low TFS_sp_P0CJ78_ZN865_HUMAN:224:278_1llm_D_1 1llm 224-278 View model · PDB
Predicted = Low TFS_sp_P0CJ78_ZN865_HUMAN:226:274_3uk3_C_1 3uk3 226-274 View model · PDB
Predicted = Low TFS_sp_P0CJ78_ZN865_HUMAN:226:274_3uk3_D_1 3uk3 226-274 View model · PDB
Predicted = Low TFS_sp_P0CJ78_ZN865_HUMAN:226:274_4is1_C_1 4is1 226-274 View model · PDB
Predicted = Low TFS_sp_P0CJ78_ZN865_HUMAN:226:274_4is1_D_1 4is1 226-274 View model · PDB
Predicted = Low TFS_sp_P0CJ78_ZN865_HUMAN:226:277_5yj3_C_1 5yj3 226-277 View model · PDB
Region 349-3961 model · 1 summary row
Actions
Predicted = Low DIMER_sp_P0CJ78_ZN865_HUMAN:349:396_1llm_D_1 1llm 349-396 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1llm 792:1042 349,349 396,396 P:C,D · DNA:A,B 45.8% / 60.4% 55,56 View · PDB DIMER_sp_P0CJ78_ZN865_HUMAN:349:396_1llm_D_1
Region 792-10425 models · 5 summary rows
Actions
Predicted = Low TFS_sp_P0CJ78_ZN865_HUMAN:792:1039_5wjq_D_1 5wjq 792-1039 View model · PDB
Predicted = Low TFS_sp_P0CJ78_ZN865_HUMAN:794:1042_5v3j_E_1 5v3j 794-1042 View model · PDB
Predicted = Low TFS_sp_P0CJ78_ZN865_HUMAN:794:1042_5v3m_C_1 5v3m 794-1042 View model · PDB
Predicted = Low TFS_sp_P0CJ78_ZN865_HUMAN:829:982_2i13_A_1 2i13 829-982 View model · PDB
Predicted = Low TFS_sp_P0CJ78_ZN865_HUMAN:873:982_5ei9_E_1 5ei9 873-982 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 792:1042 873 982 P:E · DNA:A,B 46.4% / 60.0% 99 View · PDB TFS_sp_P0CJ78_ZN865_HUMAN:873:982_5ei9_E_1
4 2i13 792:1042 829 982 P:A · DNA:C,D 41.6% / 58.4% 100 View · PDB TFS_sp_P0CJ78_ZN865_HUMAN:829:982_2i13_A_1
1 5v3m 792:1042 794 1042 P:C · DNA:A,B 37.8% / 52.6% 89 View · PDB TFS_sp_P0CJ78_ZN865_HUMAN:794:1042_5v3m_C_1
2 5v3j 792:1042 794 1042 P:E · DNA:A,B 37.8% / 52.6% 89 View · PDB TFS_sp_P0CJ78_ZN865_HUMAN:794:1042_5v3j_E_1
3 5wjq 792:1042 792 1039 P:D · DNA:A,B 35.5% / 53.6% 87 View · PDB TFS_sp_P0CJ78_ZN865_HUMAN:792:1039_5wjq_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
224-246PF00096Zinc finger, C2H2 typeoverlaps 221-279
252-276PF13912C2H2-type zinc fingeroverlaps 221-279
350-372PF00096Zinc finger, C2H2 typeoverlaps 349-396
378-400PF00096Zinc finger, C2H2 typeoverlaps 349-396
408-429PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
440-463PF13912C2H2-type zinc fingerNo overlap with loaded model regions
552-572PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
578-600PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
606-628PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
697-719PF13912C2H2-type zinc fingerNo overlap with loaded model regions
904-926PF00096Zinc finger, C2H2 typeoverlaps 792-1042
933-954PF00096Zinc finger, C2H2 typeoverlaps 792-1042
960-982PF00096Zinc finger, C2H2 typeoverlaps 792-1042