ModCRE DB

Transcription factor

P0CJ79 - ZNF888

Zinc finger protein 888

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 718 aa

82 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
M07618_2.00 NN 70+% CisBP CCTTTGGTGCTC 78.7% identity Open · Scan
M07754_2.00 NN 70+% CisBP CGCCCCCTCCCT 72.1% identity Open · Scan
Nearest Neighbor (70% - 40%)80
MotifPredictionSourceDNA bindingSupportLogoActions
M07701_2.00 NN 70-40% CisBP CCTGGGCTAGGCCCTGGC 69.8% identity Open · Scan
M07759_2.00 NN 70-40% CisBP GGAGCGCCCCTGCCCGGC 66.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 65.8% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 65.8% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 65.4% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 64.7% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 64.7% identity Open · Scan
M07723_2.00 NN 70-40% CisBP CCGCTGCTCCCTGCT 64.4% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 63.5% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 63.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 63.5% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 62.3% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 62.3% identity Open · Scan
M07657_2.00 NN 70-40% CisBP CCCCTGCATGTCCCCATTTTT 62.1% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 61.1% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 59.7% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 59.5% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 59.3% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 59.1% identity Open · Scan
M07747_2.00 NN 70-40% CisBP TGGTCTATAAAGGGCCTGGTT 58.7% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 57.9% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 57.9% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 57.8% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 57.6% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 57.6% identity Open · Scan
M07775_2.00 NN 70-40% CisBP GCCGAAACCCGGG 57.1% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 57.1% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 56.4% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 55.9% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 55.7% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 55.4% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 55.3% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 54.9% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 54.9% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 54.7% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.6% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 54.2% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 54.2% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 54.2% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 53.9% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 53.6% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 53.6% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 53.3% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 53.2% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 53.2% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 53.2% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 53.1% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 53.1% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 53.0% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 52.8% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 52.8% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 52.6% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 52.3% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 52.2% identity Open · Scan
M02896_2.00 NN 70-40% CisBP TGCTTTCTAGGAATTCA 52.1% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 52.1% identity Open · Scan
MA0731.1 NN 70-40% JASPAR TGCTTTCTAGGAATTCA 52.1% identity Open · Scan
MA1597.1 NN 70-40% JASPAR CCCAGGGAAGCCATTTC 51.8% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 51.7% identity Open · Scan
M07633_2.00 NN 70-40% CisBP CTCTCGTTGTGCCTTTGCCAT 51.6% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 51.6% identity Open · Scan
M00217_2.00 NN 70-40% CisBP TTACTCAATAT 51.4% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 51.2% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 51.1% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.9% identity Open · Scan
M08859_2.00 NN 70-40% CisBP CATTTTTTCCTCCTAGGCCT 50.9% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.9% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 50.7% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 50.7% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 50.4% identity Open · Scan
M08357_2.00 NN 70-40% CisBP GAGCCTGCTACTGAGCCTGGG 50.4% identity Open · Scan
MA0750.1 NN 70-40% JASPAR GGCGACCACCGA 50.4% identity Open · Scan
M01044_2.00 NN 70-40% CisBP TCTCTCTTTC 50.3% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 50.2% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 50.1% identity Open · Scan
M01042_2.00 NN 70-40% CisBP TGGGACCTGA 50.0% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 50.0% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 50.0% identity Open · Scan
MA0599.1 NN 70-40% JASPAR GCCCCGCCCC 50.0% identity Open · Scan
MA1516.1 NN 70-40% JASPAR GACCACGCCCA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 718 aa
267-377

Region 267-377 0 PWM

Residues
111 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5EGB
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 267-3771 model
Actions
Predicted = Low TFS_P0CJ79:267:377_5egb_A_1 5egb 267-377 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
8-48PF01352KRAB boxNo overlap with loaded model regions
242-262PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
270-292PF00096Zinc finger, C2H2 typeoverlaps 267-377
298-320PF00096Zinc finger, C2H2 typeoverlaps 267-377
326-348PF00096Zinc finger, C2H2 typeoverlaps 267-377
354-376PF00096Zinc finger, C2H2 typeoverlaps 267-377
382-404PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
410-432PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
438-460PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
466-488PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
494-516PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
522-544PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
550-572PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
578-600PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
606-628PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
634-656PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
690-712PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions