ModCRE DB

Transcription factor

P10276 - RARA

Retinoic acid receptor alpha (RAR-alpha) (Nuclear receptor subfamily 1 group B member 1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 462 aa

20 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known20
MotifPredictionSourceDNA bindingSupportLogoActions
MA0159.1 Known JASPAR AGGTCACGGAGAGGTCA Direct PWM Open · Scan
MA0729.1 Known JASPAR GAGGTCAAAAGGTCAATG Direct PWM Open · Scan
MA0730.1 Known JASPAR AGGTCATGCAAAGGTCA Direct PWM Open · Scan
MA1149.1 Known JASPAR GAGGTCATGTAGAGGTCA Direct PWM Open · Scan
MA1149.2 Known JASPAR AGGTCATGTAGAGGTCA Direct PWM Open · Scan
M03369_2.00 Known CisBP AAAGGTCATTTGAGGTCA Direct PWM Open · Scan
M03370_2.00 Known CisBP GAGGTCAAAAGGTCAATG Direct PWM Open · Scan
M03371_2.00 Known CisBP AGGTCATGCAAAGGTCA Direct PWM Open · Scan
M03372_2.00 Known CisBP AGGGTCAAAAGGTCA Direct PWM Open · Scan
M03373_2.00 Known CisBP AAAGGTCATGTGAGGTCA Direct PWM Open · Scan
M03374_2.00 Known CisBP AGGTCAACTAAAGGTCA Direct PWM Open · Scan
M05607_2.00 Known CisBP GAGGTCAAGAGGTCAC Direct PWM Open · Scan
M05608_2.00 Known CisBP AAGGTCATGACCTC Direct PWM Open · Scan
M05609_2.00 Known CisBP AAAGGTCACG Direct PWM Open · Scan
M05610_2.00 Known CisBP GAGGTCAAGAGGTCAC Direct PWM Open · Scan
M05611_2.00 Known CisBP AAGGTCACGACCTT Direct PWM Open · Scan
M05612_2.00 Known CisBP AAAGGTCACG Direct PWM Open · Scan
M05878_2.00 Known CisBP AAGGTCA Direct PWM Open · Scan
M09277_2.00 Known CisBP GGGGGATCAAGAGGTCAAGG Direct PWM Open · Scan
RARA_HUMAN.H11MO.0.A Known HOCOMOCO GGGGGATCAAGAGGTCAAGG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 462 aa
87-161

Region 87-161 0 PWM

Residues
75 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1DSZ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 87-1611 model
Actions
Predicted = Low DIMER_P10276:87:161_1dsz_A_1 1dsz 87-161 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
87-155PF00105Double treble clef zinc finger, C4 typeoverlaps 87-161
227-399PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions