ModCRE DB

Transcription factor

P10826 - RARB

Retinoic acid receptor beta (RAR-beta) (HBV-activated protein) (Nuclear receptor subfamily 1 group B member 2) (RAR-epsilon)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 455 aa

9 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known9
MotifPredictionSourceDNA bindingSupportLogoActions
MA1552.1 Known JASPAR AAGGTCATGACCTT Direct PWM Open · Scan
MA1552.2 Known JASPAR AAGGTCATGACCT Direct PWM Open · Scan
M03355_2.00 Known CisBP AAAGGTCAAAAGGTCA Direct PWM Open · Scan
M05563_2.00 Known CisBP AAAAGGTCAA Direct PWM Open · Scan
M05564_2.00 Known CisBP AAGGTCAAAAGGTCAC Direct PWM Open · Scan
M05565_2.00 Known CisBP AAGGTCATGACCTT Direct PWM Open · Scan
M05566_2.00 Known CisBP AAAAGGTCAC Direct PWM Open · Scan
M05567_2.00 Known CisBP AAGGTCAAAAGGTCAC Direct PWM Open · Scan
M05568_2.00 Known CisBP AAGGTCACGACCTT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 455 aa
87-161

Region 87-161 0 PWM

Residues
75 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1DSZ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 87-1611 model
Actions
Predicted = Low DIMER_P10826:87:161_1dsz_A_1 1dsz 87-161 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
87-155PF00105Double treble clef zinc finger, C4 typeoverlaps 87-161
227-399PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions