ModCRE DB

Transcription factor

P11473 - VDR

Vitamin D3 receptor (VDR) (1,25-dihydroxyvitamin D3 receptor) (Nuclear receptor subfamily 1 group I member 1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 427 aa

7 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known7
MotifPredictionSourceDNA bindingSupportLogoActions
MA0074.1 Known JASPAR GGGTCAACGAGTTCA Direct PWM Open · Scan
MA0693.2 Known JASPAR TGAGTTCA Direct PWM Open · Scan
M03363_2.00 Known CisBP GAGTTCATTGAGTTCA Direct PWM Open · Scan
M05877_2.00 Known CisBP TGAGTTCA Direct PWM Open · Scan
M09269_2.00 Known CisBP GGGGTCAGTGGGTTCA Direct PWM Open · Scan
M09606_2.00 Known CisBP AGAGGTCACTGAGTTCATGG Direct PWM Open · Scan
VDR_HUMAN.H11MO.0.A Known HOCOMOCO GGGGTCAGTGGGTTCA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 427 aa
18-113

Region 18-113 0 PWM

Residues
96 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1YNW
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 18-1131 model
Actions
Predicted = Low DIMER_P11473:18:113_1ynw_A_1 1ynw 18-113 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
23-91PF00105Double treble clef zinc finger, C4 typeoverlaps 18-113
228-402PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions