ModCRE DB

Transcription factor

P13631 - RARG

Retinoic acid receptor gamma (RAR-gamma) (Nuclear receptor subfamily 1 group B member 3)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 454 aa

17 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known17
MotifPredictionSourceDNA bindingSupportLogoActions
MA1553.1 Known JASPAR AAGGTCATGACCTT Direct PWM Open · Scan
MA1553.2 Known JASPAR AGGTCATGACCTT Direct PWM Open · Scan
M02397_2.00 Known CisBP AGGTCACC Direct PWM Open · Scan
M03391_2.00 Known CisBP GAGGTCAAAAGGTCACA Direct PWM Open · Scan
M03392_2.00 Known CisBP AAGGTCAACTAAAGGTCA Direct PWM Open · Scan
M03393_2.00 Known CisBP AAGGTCACCAGAGGTCA Direct PWM Open · Scan
M03394_2.00 Known CisBP GAGGTCAAAAGGTCAC Direct PWM Open · Scan
M03395_2.00 Known CisBP AAGGTCAAGCAAAGGTCA Direct PWM Open · Scan
M03396_2.00 Known CisBP AAGGTCAACAGAGGTCA Direct PWM Open · Scan
M05649_2.00 Known CisBP AAGGTCAAAAGGTCAA Direct PWM Open · Scan
M05650_2.00 Known CisBP AAGGTCATGACCTT Direct PWM Open · Scan
M05651_2.00 Known CisBP GAGGTCAAAAGGTCAT Direct PWM Open · Scan
M05652_2.00 Known CisBP AAGGTCACGACCTT Direct PWM Open · Scan
M05653_2.00 Known CisBP GAGGTCACG Direct PWM Open · Scan
M05654_2.00 Known CisBP AAGGTCACG Direct PWM Open · Scan
M09289_2.00 Known CisBP AGGTCAGAGTGACCTGGG Direct PWM Open · Scan
RARG_HUMAN.H11MO.0.B Known HOCOMOCO AGGTCAGAGTGACCTGGG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 454 aa
89-163

Region 89-163 0 PWM

Residues
75 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1DSZ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 89-1631 model
Actions
Predicted = Low DIMER_P13631:89:163_1dsz_A_1 1dsz 89-163 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
89-157PF00105Double treble clef zinc finger, C4 typeoverlaps 89-163
228-398PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions