Transcription factor

P13984 - GTF2F2

General transcription factor IIF subunit 2 (General transcription factor IIF 30 kDa subunit) (Transcription initiation factor IIF subunit beta) (TFIIF-beta) (Transcription initiation factor RAP30)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 249 aa

4 Generated PWM 9 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE4

Motif	Prediction	Source	DNA binding	Support	Actions
TFS_sp_P13984_T2FB_HUMAN:2:238_5iy7_T_1	ModCRE	Homology model	TAAGGCGCTTTTCG	Region 2-238 · 1 3D model	Open · Scan
TFS_sp_P13984_T2FB_HUMAN:2:238_5iy9_T_1	ModCRE	Homology model	AAGGGGCCC	Region 2-238 · 1 3D model	Open · Scan
TFS_sp_P13984_T2FB_HUMAN:2:238_5iya_T_1	ModCRE	Homology model	TCGGGGCCCCGGG	Region 2-238 · 1 3D model	Open · Scan
TFS_sp_P13984_T2FB_HUMAN:2:238_5iyd_T_1	ModCRE	Homology model	TCCGGGCCG	Region 2-238 · 1 3D model	Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 249 aa

2-238

Region 2-238 4 PWM

Residues: 237 aa
Domains: PF17683 · TFIIF, beta subunit N-terminus PF02270 · TFIIF, beta subunit HTH domain
3D models: 9 active PDBs · 5 summary rows
Templates: 5IY7, 5IY9, 5IYA, 5IYD, 6O9L, 7NVT, 7NVU, 7NVY, ...
Sources: Predicted = Low

Scan this region Show models

3D Models

Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.

9 active PDB models 5 summary rows

Region 2-2389 models · 5 summary rows

				Actions
Predicted = Low	TFS_sp_P13984_T2FB_HUMAN:2:238_5iy7_T_1	5iy7	2-238	View model · PDB
Predicted = Low	TFS_sp_P13984_T2FB_HUMAN:2:238_5iy9_T_1	5iy9	2-238	View model · PDB
Predicted = Low	TFS_sp_P13984_T2FB_HUMAN:2:238_5iya_T_1	5iya	2-238	View model · PDB
Predicted = Low	TFS_sp_P13984_T2FB_HUMAN:2:238_5iyd_T_1	5iyd	2-238	View model · PDB
Predicted = Low	TFS_sp_P13984_T2FB_HUMAN:2:238_6o9l_T_1	6o9l	2-238	View model · PDB
Predicted = Low	TFS_sp_P13984_T2FB_HUMAN:2:238_7nvt_R_1	7nvt	2-238	View model · PDB
Predicted = Low	TFS_sp_P13984_T2FB_HUMAN:2:238_7nvu_R_1	7nvu	2-238	View model · PDB
Predicted = Low	TFS_sp_P13984_T2FB_HUMAN:2:238_7nvy_R_1	7nvy	2-238	View model · PDB
Predicted = Low	TFS_sp_P13984_T2FB_HUMAN:2:238_7nvz_R_1	7nvz	2-238	View model · PDB

Model-summary evidence imported for this region.

Rank	Template	Domain	N-tails	C-tails	Chains	Identity / similarity	Coverage	Model file
1	6o9l	2:247	2	238	P:T · DNA:X,Y	100.0% / 100.0%	100	View · PDB TFS_sp_P13984_T2FB_HUMAN:2:238_6o9l_T_1
2	7nvz	2:247	2	238	P:R · DNA:N,T	93.7% / 93.7%	100	View · PDB TFS_sp_P13984_T2FB_HUMAN:2:238_7nvz_R_1
3	7nvy	2:247	2	238	P:R · DNA:N,T	93.7% / 93.7%	100	View · PDB TFS_sp_P13984_T2FB_HUMAN:2:238_7nvy_R_1
4	7nvu	2:247	2	238	P:R · DNA:N,T	93.7% / 93.7%	100	View · PDB TFS_sp_P13984_T2FB_HUMAN:2:238_7nvu_R_1
5	7nvt	2:247	2	238	P:R · DNA:N,T	93.7% / 93.7%	100	View · PDB TFS_sp_P13984_T2FB_HUMAN:2:238_7nvt_R_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

Residues	PFAM	Domain	Used by prediction region?
16-113	PF17683	TFIIF, beta subunit N-terminus	overlaps 2-238
176-240	PF02270	TFIIF, beta subunit HTH domain	overlaps 2-238