ModCRE DB

Transcription factor

P15172 - MYOD1

Myoblast determination protein 1 (Class C basic helix-loop-helix protein 1) (bHLHc1) (Myogenic factor 3) (Myf-3)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 320 aa

14 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known14
MotifPredictionSourceDNA bindingSupportLogoActions
MA0499.2 Known JASPAR CAGCACCTGTCCC Direct PWM Open · Scan
MA0499.3 Known JASPAR GCACCTGTC Direct PWM Open · Scan
M04116_2.00 Known CisBP CAACAGCTGTTA Direct PWM Open · Scan
M04117_2.00 Known CisBP CAACAGCTGTCG Direct PWM Open · Scan
M04118_2.00 Known CisBP CAACAGCTGTTG Direct PWM Open · Scan
M04119_2.00 Known CisBP TAACAGCTGTCG Direct PWM Open · Scan
M04120_2.00 Known CisBP GAACAGCTGTCG Direct PWM Open · Scan
M04121_2.00 Known CisBP CAACAGCTGTCG Direct PWM Open · Scan
M04122_2.00 Known CisBP CAACAGCTGTTG Direct PWM Open · Scan
M04123_2.00 Known CisBP CAACAGCTGTCG Direct PWM Open · Scan
M08724_2.00 Known CisBP GGCAGGAACAGCTGC Direct PWM Open · Scan
M09838_2.00 Known CisBP CAACACCTGTCC Direct PWM Open · Scan
M09840_2.00 Known CisBP ACCACCTGTC Direct PWM Open · Scan
MYOD1_HUMAN.H11MO.0.A Known HOCOMOCO GCAGCTGTTCCTGCC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 320 aa
102-166

Region 102-166 0 PWM

Residues
65 aa
Domains
PF01586 · Myogenic Basic domain PF00010 · Helix-loop-helix DNA-binding domain
3D models
1 active PDB
Templates
1MDY
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 102-1661 model
Actions
Predicted = Low DIMER_P15172:102:166_1mdy_A_1 1mdy 102-166 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
27-109PF01586Myogenic Basic domainoverlaps 102-166
110-161PF00010Helix-loop-helix DNA-binding domainoverlaps 102-166
191-259PF12232Myogenic determination factor 5No overlap with loaded model regions