ModCRE DB

Transcription factor

P16989 - YBX3

Y-box-binding protein 3 (Cold shock domain-containing protein A) (DNA-binding protein A) (Single-strand DNA-binding protein NF-GMB)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 372 aa

8 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)2
MotifPredictionSourceDNA bindingSupportLogoActions
M01208_2.00 NN 70-40% CisBP TAGATAGA 60.4% identity Open · Scan
M04662_2.00 NN 70-40% CisBP GATGGTACA 57.3% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
p16989.af3.0 ModCRE AlphaFold3 model GCTTAAATTC AlphaFold3 model · ModCRE PWM Open · Scan
p16989.af3.1 ModCRE AlphaFold3 model GCTTAAATTC AlphaFold3 model · ModCRE PWM Open · Scan
p16989.af3.2 ModCRE AlphaFold3 model TCTCATTCCA AlphaFold3 model · ModCRE PWM Open · Scan
p16989.af3.3 ModCRE AlphaFold3 model AAATTATCCG AlphaFold3 model · ModCRE PWM Open · Scan
p16989.af3.4 ModCRE AlphaFold3 model CGGCATCGG AlphaFold3 model · ModCRE PWM Open · Scan
p16989.af3.5 ModCRE AlphaFold3 model ACAAAATCTA AlphaFold3 model · ModCRE PWM Open · Scan
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models
SourceModelTemplateResidues modeledActions
Predicted = Lowp16989.af3.0-Full sequenceView model · PDB
Predicted = Lowp16989.af3.1-Full sequenceView model · PDB
Predicted = Lowp16989.af3.2-Full sequenceView model · PDB
Predicted = Lowp16989.af3.3-Full sequenceView model · PDB
Predicted = Lowp16989.af3.4-Full sequenceView model · PDB
Predicted = Lowp16989.af3.5-Full sequenceView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomain
93-159PF00313'Cold-shock' DNA-binding domain