ModCRE DB

Transcription factor

P17020 - ZNF16

Zinc finger protein 16 (Zinc finger protein KOX9)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 682 aa

4 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known4
MotifPredictionSourceDNA bindingSupportLogoActions
MA1654.1 Known JASPAR AATAGGGAGCCATGGAAGGTTTT Direct PWM Open · Scan
MA1654.2 Known JASPAR AATAGGGAGCCATGGAAGGTT Direct PWM Open · Scan
M08251_2.00 Known CisBP CCTTCCATGGCTCCC Direct PWM Open · Scan
M08336_2.00 Known CisBP AAGAACCTTCCATGGCTC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 682 aa
290-400

Region 290-400 0 PWM

Residues
111 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5EGB
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 290-4001 model
Actions
Predicted = Low TFS_P17020:290:400_5egb_A_1 5egb 290-400 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
265-287PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
293-315PF00096Zinc finger, C2H2 typeoverlaps 290-400
321-343PF00096Zinc finger, C2H2 typeoverlaps 290-400
349-371PF00096Zinc finger, C2H2 typeoverlaps 290-400
377-399PF00096Zinc finger, C2H2 typeoverlaps 290-400
405-427PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
433-455PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
461-483PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
489-511PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
517-539PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
545-567PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
573-595PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
601-623PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
629-651PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
657-679PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions