ModCRE DB

Transcription factor

P17024 - ZNF20

Zinc finger protein 20 (Zinc finger protein KOX13)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 532 aa

50 Generated PWM 9 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)46
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 66.2% identity Open · Scan
M07733_2.00 NN 70-40% CisBP TCTTTCTCTCTCTCC 65.5% identity Open · Scan
M07628_2.00 NN 70-40% CisBP AGTGGTTCTGCTTCT 61.6% identity Open · Scan
M07627_2.00 NN 70-40% CisBP CAGTCACCTTCTGG 59.5% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 58.8% identity Open · Scan
M07659_2.00 NN 70-40% CisBP GTCTTCCAAGTAGCTGGTGTT 58.5% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 58.1% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 58.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 57.6% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 56.9% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 56.4% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 56.4% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 56.3% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 56.3% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 55.8% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 55.6% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 55.5% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 55.1% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 55.1% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 55.0% identity Open · Scan
M00022_2.00 NN 70-40% CisBP GGCGCCACAG 54.3% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 54.1% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 54.1% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 54.0% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 53.9% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 53.7% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 53.5% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 52.9% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 52.8% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 52.2% identity Open · Scan
M07731_2.00 NN 70-40% CisBP TTTCCCAGCAGCAACAGCACCGCCCCCCCC 52.0% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 52.0% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 51.8% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.4% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 51.1% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 51.1% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 51.1% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.9% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 50.9% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 50.7% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.7% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 50.7% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 50.4% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 50.3% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 50.2% identity Open · Scan
M00645_2.00 NN 70-40% CisBP CGCCCACGCA 50.0% identity Open · Scan
ModCRE4
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_P17024_ZNF20_HUMAN:309:357_1llm_D_1 ModCRE Homology model TCCACGCCGGGC Region 309-357 · 1 3D model Open · Scan
TFS_sp_P17024_ZNF20_HUMAN:146:221_1a1g_A_1 ModCRE Homology model GTATTCTGGG Region 146-221 · 1 3D model Open · Scan
TFS_sp_P17024_ZNF20_HUMAN:168:221_4gzn_C_1 ModCRE Homology model CCCGCTGGGC Region 168-221 · 1 3D model Open · Scan
TFS_sp_P17024_ZNF20_HUMAN:168:221_4m9v_C_1 ModCRE Homology model AAGACTGGGC Region 168-221 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 532 aa
146-529

Region 146-529 4 PWM

Residues
384 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13894 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type PF13912 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
9 active PDBs · 6 summary rows
Templates
1A1G, 1LLM, 2I13, 4GZN, 4M9V, 5V3J, 5V3M, 5WJQ, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
9 active PDB models 6 summary rows
Region 146-5299 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_P17024_ZNF20_HUMAN:309:357_1llm_D_1 1llm 309-357 View model · PDB
Predicted = Low TFS_sp_P17024_ZNF20_HUMAN:146:221_1a1g_A_1 1a1g 146-221 View model · PDB
Predicted = Low TFS_sp_P17024_ZNF20_HUMAN:168:221_4gzn_C_1 4gzn 168-221 View model · PDB
Predicted = Low TFS_sp_P17024_ZNF20_HUMAN:168:221_4m9v_C_1 4m9v 168-221 View model · PDB
Predicted = Low TFS_sp_P17024_ZNF20_HUMAN:199:488_7w1m_H_1 7w1m 199-488 View model · PDB
Predicted = Low TFS_sp_P17024_ZNF20_HUMAN:225:501_5wjq_D_1 5wjq 225-501 View model · PDB
Predicted = Low TFS_sp_P17024_ZNF20_HUMAN:256:529_5v3j_E_1 5v3j 256-529 View model · PDB
Predicted = Low TFS_sp_P17024_ZNF20_HUMAN:256:529_5v3m_C_1 5v3m 256-529 View model · PDB
Predicted = Low TFS_sp_P17024_ZNF20_HUMAN:320:473_2i13_A_1 2i13 320-473 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 5v3m 195:529 256 529 P:C · DNA:A,B 53.1% / 72.0% 98 View · PDB TFS_sp_P17024_ZNF20_HUMAN:256:529_5v3m_C_1
2 5v3j 195:529 256 529 P:E · DNA:A,B 53.1% / 72.0% 98 View · PDB TFS_sp_P17024_ZNF20_HUMAN:256:529_5v3j_E_1
3 5wjq 195:529 225 501 P:D · DNA:A,B 52.9% / 69.4% 98 View · PDB TFS_sp_P17024_ZNF20_HUMAN:225:501_5wjq_D_1
4 2i13 195:529 320 473 P:A · DNA:C,D 52.6% / 70.8% 100 View · PDB TFS_sp_P17024_ZNF20_HUMAN:320:473_2i13_A_1
1 1llm 195:529 309,309 357,357 P:C,D · DNA:A,B 44.9% / 63.3% 56,57 View · PDB DIMER_sp_P17024_ZNF20_HUMAN:309:357_1llm_D_1
5 7w1m 195:529 199 488 P:H · DNA:F,G 35.1% / 50.5% 90 View · PDB TFS_sp_P17024_ZNF20_HUMAN:199:488_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
6-47PF01352KRAB boxNo overlap with loaded model regions
227-249PF00096Zinc finger, C2H2 typeoverlaps 146-529
256-277PF00096Zinc finger, C2H2 typeoverlaps 146-529
283-305PF00096Zinc finger, C2H2 typeoverlaps 146-529
311-333PF00096Zinc finger, C2H2 typeoverlaps 146-529
339-361PF13894C2H2-type zinc fingeroverlaps 146-529
369-389PF00096Zinc finger, C2H2 typeoverlaps 146-529
395-417PF13912C2H2-type zinc fingeroverlaps 146-529
423-445PF00096Zinc finger, C2H2 typeoverlaps 146-529
506-528PF00096Zinc finger, C2H2 typeoverlaps 146-529