ModCRE DB

Transcription factor

P17029 - ZKSCAN1

Zinc finger protein with KRAB and SCAN domains 1 (Zinc finger protein 139) (Zinc finger protein 36) (Zinc finger protein KOX18)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 563 aa

5 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known5
MotifPredictionSourceDNA bindingSupportLogoActions
MA1585.1 Known JASPAR ATAGTAGGTG Direct PWM Open · Scan
MA1585.2 Known JASPAR ATAGTAGGT Direct PWM Open · Scan
M05847_2.00 Known CisBP AGACCTACTATGC Direct PWM Open · Scan
M08874_2.00 Known CisBP TGAGGACCTACTGTGTGCC Direct PWM Open · Scan
ZKSC1_HUMAN.H11MO.0.B Known HOCOMOCO TGAGGACCTACTGTGTGCC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 563 aa
352-539

Region 352-539 0 PWM

Residues
188 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5WJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 352-5391 model
Actions
Predicted = Low TFS_P17029:352:539_5wjq_D_1 5wjq 352-539 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
52-138PF02023SCAN domainNo overlap with loaded model regions
227-262PF01352KRAB boxNo overlap with loaded model regions
377-399PF00096Zinc finger, C2H2 typeoverlaps 352-539
405-427PF00096Zinc finger, C2H2 typeoverlaps 352-539
433-455PF00096Zinc finger, C2H2 typeoverlaps 352-539
461-483PF00096Zinc finger, C2H2 typeoverlaps 352-539
489-511PF00096Zinc finger, C2H2 typeoverlaps 352-539
517-539PF00096Zinc finger, C2H2 typeoverlaps 352-539