ModCRE DB

Transcription factor

P17038 - ZNF43

Zinc finger protein 43 (Zinc finger protein 39) (Zinc finger protein HTF6) (Zinc finger protein KOX27)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 809 aa

88 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
M00955_2.00 NN 70+% CisBP ACGTCCTCT 76.1% identity Open · Scan
M08381_2.00 NN 70+% CisBP ACATTTTGTCCTCCTAGTCCT 73.0% identity Open · Scan
Nearest Neighbor (70% - 40%)86
MotifPredictionSourceDNA bindingSupportLogoActions
M08921_2.00 NN 70-40% CisBP CCTCATTCTTCTTGGACATG 68.7% identity Open · Scan
M08295_2.00 NN 70-40% CisBP CTGCTGGAATCTCCA 66.6% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 65.7% identity Open · Scan
M07715_2.00 NN 70-40% CisBP CCGCCGCCGCCGTGG 65.3% identity Open · Scan
M07565_2.00 NN 70-40% CisBP CCTCTGGGGGCTCGTCCA 64.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 63.8% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 62.7% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 62.3% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 62.3% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 62.3% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 62.3% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 62.3% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 62.0% identity Open · Scan
M07586_2.00 NN 70-40% CisBP GGGACCCGGGTGGGGGCGTCCCCC 61.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 61.4% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 61.1% identity Open · Scan
M07775_2.00 NN 70-40% CisBP GCCGAAACCCGGG 61.1% identity Open · Scan
M07687_2.00 NN 70-40% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 60.1% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 60.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 60.0% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 60.0% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 59.5% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 59.2% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 59.2% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 59.1% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 59.0% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 58.4% identity Open · Scan
MA1599.1 NN 70-40% JASPAR CGGGCCAAGCCCCTAT 58.3% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 58.1% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 57.8% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 57.3% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 57.0% identity Open · Scan
M08365_2.00 NN 70-40% CisBP GCCAGCAGCCATCAG 56.5% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 56.5% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 56.4% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 56.3% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 56.2% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 56.2% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 56.0% identity Open · Scan
M07733_2.00 NN 70-40% CisBP TCTTTCTCTCTCTCC 55.9% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 55.9% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 55.3% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 55.0% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 55.0% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 54.8% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 54.8% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 54.5% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 54.5% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 54.5% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 54.4% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 54.2% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 54.2% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 54.1% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 54.0% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 53.8% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 53.3% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 53.3% identity Open · Scan
M08312_2.00 NN 70-40% CisBP ATTGGGTTTCTGTTGCTT 53.2% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 53.0% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 52.9% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 52.8% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 52.5% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 52.4% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 52.3% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 52.3% identity Open · Scan
M07767_2.00 NN 70-40% CisBP AAAAACCCCAGA 52.3% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 52.0% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 52.0% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 51.9% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.9% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 51.8% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 51.7% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 51.3% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 51.3% identity Open · Scan
M03710_2.00 NN 70-40% CisBP CTCACGCCCCCC 51.1% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 50.9% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 50.6% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 50.5% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 50.4% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 50.4% identity Open · Scan
M01044_2.00 NN 70-40% CisBP TCTCTCTTTC 50.3% identity Open · Scan
M00217_2.00 NN 70-40% CisBP TTACTCAATAT 50.0% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 50.0% identity Open · Scan
M01868_2.00 NN 70-40% CisBP TCTTGGCG 50.0% identity Open · Scan
M02896_2.00 NN 70-40% CisBP TGCTTTCTAGGAATTCA 50.0% identity Open · Scan
MA0731.1 NN 70-40% JASPAR TGCTTTCTAGGAATTCA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 809 aa
313-589

Region 313-589 0 PWM

Residues
277 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5V3J
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 313-5891 model
Actions
Predicted = Low TFS_P17038:313:589_5v3j_E_1 5v3j 313-589 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
3-44PF01352KRAB boxNo overlap with loaded model regions
174-196PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
230-252PF13912C2H2-type zinc fingerNo overlap with loaded model regions
286-308PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
314-336PF00096Zinc finger, C2H2 typeoverlaps 313-589
342-364PF00096Zinc finger, C2H2 typeoverlaps 313-589
370-392PF00096Zinc finger, C2H2 typeoverlaps 313-589
398-420PF00096Zinc finger, C2H2 typeoverlaps 313-589
426-448PF00096Zinc finger, C2H2 typeoverlaps 313-589
454-476PF00096Zinc finger, C2H2 typeoverlaps 313-589
482-504PF00096Zinc finger, C2H2 typeoverlaps 313-589
510-532PF00096Zinc finger, C2H2 typeoverlaps 313-589
538-560PF00096Zinc finger, C2H2 typeoverlaps 313-589
566-588PF00096Zinc finger, C2H2 typeoverlaps 313-589
594-616PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
622-644PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
650-672PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
678-700PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
706-728PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
734-756PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
762-784PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions