ModCRE DB

Transcription factor

P17040 - ZSCAN20

Zinc finger and SCAN domain-containing protein 20 (Zinc finger protein 31) (Zinc finger protein 360) (Zinc finger protein KOX29)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1043 aa

85 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)8
MotifPredictionSourceDNA bindingSupportLogoActions
M00764_2.00 NN 70+% CisBP GTCTACAC 76.2% identity Open · Scan
M00952_2.00 NN 70+% CisBP GGATGCTC 71.7% identity Open · Scan
M00953_2.00 NN 70+% CisBP ATCTATAT 71.7% identity Open · Scan
M00943_2.00 NN 70+% CisBP CCCGCTGC 70.5% identity Open · Scan
M00944_2.00 NN 70+% CisBP TCGCTATAA 70.5% identity Open · Scan
M00958_2.00 NN 70+% CisBP CGGCATCCC 70.5% identity Open · Scan
M00960_2.00 NN 70+% CisBP TGCATCCC 70.5% identity Open · Scan
M00959_2.00 NN 70+% CisBP GCCCTCCC 70.2% identity Open · Scan
Nearest Neighbor (70% - 40%)77
MotifPredictionSourceDNA bindingSupportLogoActions
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 69.9% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 69.4% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 68.2% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 67.4% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 67.1% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 67.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 65.8% identity Open · Scan
M04483_2.00 NN 70-40% CisBP ATGCACACACTGAAAAA 65.4% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 65.1% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 64.9% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 63.9% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 63.2% identity Open · Scan
M05847_2.00 NN 70-40% CisBP AGACCTACTATGC 62.0% identity Open · Scan
MA1585.1 NN 70-40% JASPAR ATAGTAGGTG 62.0% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 60.8% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 60.0% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 59.7% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 59.1% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 58.6% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 57.3% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 57.2% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 57.0% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 56.8% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 56.4% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 56.3% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 56.2% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 56.2% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 56.2% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 56.2% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 56.1% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 56.0% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 55.6% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 55.5% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 55.3% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 55.3% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 55.2% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 54.9% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 54.4% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 54.3% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 54.2% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 53.8% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 53.6% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 53.5% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 53.3% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 53.2% identity Open · Scan
MA1592.1 NN 70-40% JASPAR GGTATGAGTTCTCGCT 53.0% identity Open · Scan
M00134_2.00 NN 70-40% CisBP GCCACGCCCA 52.5% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 52.3% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 52.2% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 52.2% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 52.1% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 52.1% identity Open · Scan
M07638_2.00 NN 70-40% CisBP TGCAGCTCCCTGCCC 51.9% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 51.9% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 51.9% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 51.6% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 51.6% identity Open · Scan
M07723_2.00 NN 70-40% CisBP CCGCTGCTCCCTGCT 51.5% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 51.5% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 51.4% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 51.4% identity Open · Scan
M01044_2.00 NN 70-40% CisBP TCTCTCTTTC 51.3% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.9% identity Open · Scan
M01442_2.00 NN 70-40% CisBP ACCCCACATT 50.8% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 50.8% identity Open · Scan
M04515_2.00 NN 70-40% CisBP TATGCTATAACAAGCAGCCCC 50.8% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 50.8% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 50.7% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 50.7% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 50.7% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 50.5% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 50.4% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 50.4% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 50.4% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 50.4% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 50.1% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1043 aa
709-817

Region 709-817 0 PWM

Residues
109 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
6E93
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 709-8171 model
Actions
Predicted = Low TFS_P17040:709:817_6e93_A_1 6e93 709-817 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
47-134PF02023SCAN domainNo overlap with loaded model regions
325-408PF13837Myb/SANT-like DNA-binding domainNo overlap with loaded model regions
485-568PF13837Myb/SANT-like DNA-binding domainNo overlap with loaded model regions
710-732PF00096Zinc finger, C2H2 typeoverlaps 709-817
738-760PF00096Zinc finger, C2H2 typeoverlaps 709-817
766-788PF00096Zinc finger, C2H2 typeoverlaps 709-817
794-816PF00096Zinc finger, C2H2 typeoverlaps 709-817
875-897PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
903-925PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
931-953PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
959-981PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
987-1009PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
1015-1037PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions