ModCRE DB

Transcription factor

P17098 - ZNF8

Zinc finger protein 8 (Zinc finger protein HF.18)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 575 aa

44 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known5
MotifPredictionSourceDNA bindingSupportLogoActions
MA1718.1 Known JASPAR GTATGGATATACCACATTTT Direct PWM Open · Scan
M07781_2.00 Known CisBP ACGTACCACATT Direct PWM Open · Scan
M08401_2.00 Known CisBP CTTGTGGTACGCCTATGA Direct PWM Open · Scan
M08961_2.00 Known CisBP TCCATTGTATGGATATACCACA Direct PWM Open · Scan
ZNF8_HUMAN.H11MO.0.C Known HOCOMOCO TGTGGTATATCCATACAATGGA Direct PWM Open · Scan
Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M00149_2.00 NN 70+% CisBP CGTACGCC 73.2% identity Open · Scan
Nearest Neighbor (70% - 40%)38
MotifPredictionSourceDNA bindingSupportLogoActions
M00944_2.00 NN 70-40% CisBP TCGCTATAA 65.4% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 64.7% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 64.2% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 63.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 63.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 63.0% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 62.3% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 62.3% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 61.9% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 61.1% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 60.1% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 60.0% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 59.7% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 59.7% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 59.6% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 58.6% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 58.4% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 57.6% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 57.3% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 57.2% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 56.7% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 56.0% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 55.9% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 54.9% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.0% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 53.9% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 53.1% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 53.1% identity Open · Scan
M01529_2.00 NN 70-40% CisBP CCCCGCATT 51.7% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 51.6% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 51.3% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 51.2% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 51.0% identity Open · Scan
M07666_2.00 NN 70-40% CisBP ATCTAGCCCCTGCCTACC 50.6% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 50.5% identity Open · Scan
M07650_2.00 NN 70-40% CisBP GGTCTATAAAAGGGGGGCCGCGGGGGGG 50.4% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 50.0% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 575 aa
228-516

Region 228-516 0 PWM

Residues
289 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5V3J
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 228-5161 model
Actions
Predicted = Low TFS_P17098:228:516_5v3j_E_1 5v3j 228-516 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
24-65PF01352KRAB boxNo overlap with loaded model regions
257-279PF00096Zinc finger, C2H2 typeoverlaps 228-516
285-307PF00096Zinc finger, C2H2 typeoverlaps 228-516
313-335PF00096Zinc finger, C2H2 typeoverlaps 228-516
341-363PF00096Zinc finger, C2H2 typeoverlaps 228-516
369-391PF00096Zinc finger, C2H2 typeoverlaps 228-516
397-419PF00096Zinc finger, C2H2 typeoverlaps 228-516
467-489PF00096Zinc finger, C2H2 typeoverlaps 228-516