ModCRE DB

Transcription factor

P17480 - UBTF

Nucleolar transcription factor 1 (Autoantigen NOR-90) (Upstream-binding factor 1) (UBF-1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 764 aa

8 Generated PWM 13 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE8
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_P17480_UBF1_HUMAN:405:470_1hry_A_1 ModCRE Homology model GCAAAAAC Region 405-470 · 1 3D model Open · Scan
TFS_sp_P17480_UBF1_HUMAN:405:470_1hrz_A_1 ModCRE Homology model GCAAAAAA Region 405-470 · 1 3D model Open · Scan
TFS_sp_P17480_UBF1_HUMAN:405:486_1j47_A_1 ModCRE Homology model GGGTTCCATTTTGG Region 405-486 · 1 3D model Open · Scan
TFS_sp_P17480_UBF1_HUMAN:405:550_2gzk_A_1 ModCRE Homology model TATTTTTTAAATCCCC Region 405-550 · 1 3D model Open · Scan
TFS_sp_P17480_UBF1_HUMAN:407:469_5jh0_D_1 ModCRE Homology model TATAATTATTAATTTTAAAAATT Region 407-469 · 1 3D model Open · Scan
TFS_sp_P17480_UBF1_HUMAN:408:469_4euw_A_1 ModCRE Homology model GCTATCCATATG Region 408-469 · 1 3D model Open · Scan
TFS_sp_P17480_UBF1_HUMAN:408:469_4s2q_D_1 ModCRE Homology model CTATGTGTCGGGA Region 408-469 · 1 3D model Open · Scan
TFS_sp_P17480_UBF1_HUMAN:408:470_6edb_B_1 ModCRE Homology model AAAGGACAATT Region 408-470 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 764 aa
110-374
405-550

Region 110-374 0 PWM

Residues
265 aa
Domains
PF00505 · HMG (high mobility group) box PF00505 · HMG (high mobility group) box PF09011 · HMG-box domain
3D models
4 active PDBs · 4 summary rows
Templates
2GZK, 6HC3, 7LBX
Sources
Predicted = Low
Scan this region Show models

Region 405-550 8 PWM

Residues
146 aa
Domains
PF00505 · HMG (high mobility group) box PF14887 · HMG (high mobility group) box 5
3D models
9 active PDBs · 1 summary row
Templates
1HRY, 1HRZ, 1J47, 2GZK, 4EUW, 4S2Q, 5JH0, 6CIJ, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
13 active PDB models 5 summary rows
Region 110-3744 models · 4 summary rows
Actions
Predicted = Low TFS_sp_P17480_UBF1_HUMAN:110:266_2gzk_A_1 2gzk 110-266 View model · PDB
Predicted = Low TFS_sp_P17480_UBF1_HUMAN:196:374_6hc3_A_1 6hc3 196-374 View model · PDB
Predicted = Low TFS_sp_P17480_UBF1_HUMAN:196:374_7lbx_A_1 7lbx 196-374 View model · PDB
Predicted = Low TFS_sp_P17480_UBF1_HUMAN:196:374_7lbx_B_1 7lbx 196-374 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
3 6hc3 110:266 196 374 P:A · DNA:B,C 24.2% / 45.6% 93 View · PDB TFS_sp_P17480_UBF1_HUMAN:196:374_6hc3_A_1
4 7lbx 110:266 196 374 P:B · DNA:C,D,E,F 24.2% / 45.6% 94 View · PDB TFS_sp_P17480_UBF1_HUMAN:196:374_7lbx_B_1
5 7lbx 110:266 196 374 P:A · DNA:C,D,E,F 24.2% / 45.6% 94 View · PDB TFS_sp_P17480_UBF1_HUMAN:196:374_7lbx_A_1
1 2gzk 110:266 110 266 P:A · DNA:B,C 20.4% / 46.5% 98 View · PDB TFS_sp_P17480_UBF1_HUMAN:110:266_2gzk_A_1
Region 405-5509 models · 1 summary row
Actions
Predicted = Low TFS_sp_P17480_UBF1_HUMAN:405:470_1hry_A_1 1hry 405-470 View model · PDB
Predicted = Low TFS_sp_P17480_UBF1_HUMAN:405:470_1hrz_A_1 1hrz 405-470 View model · PDB
Predicted = Low TFS_sp_P17480_UBF1_HUMAN:405:486_1j47_A_1 1j47 405-486 View model · PDB
Predicted = Low TFS_sp_P17480_UBF1_HUMAN:405:550_2gzk_A_1 2gzk 405-550 View model · PDB
Predicted = Low TFS_sp_P17480_UBF1_HUMAN:407:469_5jh0_D_1 5jh0 407-469 View model · PDB
Predicted = Low TFS_sp_P17480_UBF1_HUMAN:407:469_6cij_N_1 6cij 407-469 View model · PDB
Predicted = Low TFS_sp_P17480_UBF1_HUMAN:408:469_4euw_A_1 4euw 408-469 View model · PDB
Predicted = Low TFS_sp_P17480_UBF1_HUMAN:408:469_4s2q_D_1 4s2q 408-469 View model · PDB
Predicted = Low TFS_sp_P17480_UBF1_HUMAN:408:470_6edb_B_1 6edb 408-470 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
2 6cij 110:266 407 469 P:N · DNA:G,M 38.1% / 58.7% 45 View · PDB TFS_sp_P17480_UBF1_HUMAN:407:469_6cij_N_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
112-179PF00505HMG (high mobility group) boxoverlaps 110-374
197-263PF00505HMG (high mobility group) boxoverlaps 110-374
299-357PF09011HMG-box domainoverlaps 110-374
407-468PF00505HMG (high mobility group) boxoverlaps 405-550
479-563PF14887HMG (high mobility group) box 5overlaps 405-550