ModCRE DB

Transcription factor

P17482 - HOXB9

Homeobox protein Hox-B9 (Homeobox protein Hox-2.5) (Homeobox protein Hox-2E)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 250 aa

5 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known5
MotifPredictionSourceDNA bindingSupportLogoActions
MA1503.1 Known JASPAR GTCGTAAAAT Direct PWM Open · Scan
MA1503.2 Known JASPAR GTCGTAAAA Direct PWM Open · Scan
M05289_2.00 Known CisBP GTCGTAAAAT Direct PWM Open · Scan
M05290_2.00 Known CisBP ATTTTATTGC Direct PWM Open · Scan
M05291_2.00 Known CisBP GTCGTAAAAT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 250 aa
179-242

Region 179-242 0 PWM

Residues
64 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
5ZJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 179-2421 model
Actions
Predicted = Low DIMER_P17482:179:242_5zjq_A_1 5zjq 179-242 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
1-172PF04617Hox9 activation regionNo overlap with loaded model regions
186-242PF00046Homeodomainoverlaps 179-242