ModCRE DB

Transcription factor

P17483 - HOXB4

Homeobox protein Hox-B4 (Homeobox protein Hox-2.6) (Homeobox protein Hox-2F)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 251 aa

7 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known7
MotifPredictionSourceDNA bindingSupportLogoActions
MA1499.1 Known JASPAR ATCATTAG Direct PWM Open · Scan
MA1499.2 Known JASPAR TCATTA Direct PWM Open · Scan
M05343_2.00 Known CisBP CTAATGAT Direct PWM Open · Scan
M05344_2.00 Known CisBP TTAATGAT Direct PWM Open · Scan
M05345_2.00 Known CisBP CTAATGAC Direct PWM Open · Scan
M09162_2.00 Known CisBP TTAATGGC Direct PWM Open · Scan
HXB4_HUMAN.H11MO.0.B Known HOCOMOCO TTAATGGC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 251 aa
139-222

Region 139-222 0 PWM

Residues
84 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
2R5Y
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 139-2221 model
Actions
Predicted = Low DIMER_P17483:139:222_2r5y_A_1 2r5y 139-222 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
163-219PF00046Homeodomainoverlaps 139-222