ModCRE DB

Transcription factor

P19793 - RXRA

Retinoic acid receptor RXR-alpha (Nuclear receptor subfamily 2 group B member 1) (Retinoid X receptor alpha)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 462 aa

21 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known21
MotifPredictionSourceDNA bindingSupportLogoActions
MA0065.1 Known JASPAR CCAGGGGTCAAAGGTCATCG Direct PWM Open · Scan
MA0074.1 Known JASPAR GGGTCAACGAGTTCA Direct PWM Open · Scan
MA0115.1 Known JASPAR AAAGGTCAAAGGTCAAC Direct PWM Open · Scan
MA0159.1 Known JASPAR AGGTCACGGAGAGGTCA Direct PWM Open · Scan
MA1146.1 Known JASPAR GAGGTCATTGACCTT Direct PWM Open · Scan
MA1146.2 Known JASPAR AGGTCATTGACCT Direct PWM Open · Scan
MA1147.1 Known JASPAR GAGGTCATTGACCCC Direct PWM Open · Scan
MA1147.2 Known JASPAR AGGTCATTGACCC Direct PWM Open · Scan
MA1148.1 Known JASPAR ATGTAGGTCAAAGGTCAT Direct PWM Open · Scan
MA1148.2 Known JASPAR ATGTAGGTCAAAGGTCA Direct PWM Open · Scan
M03408_2.00 Known CisBP GGGGTCAAAGGTCA Direct PWM Open · Scan
M03409_2.00 Known CisBP GGGGTCATGACCCC Direct PWM Open · Scan
M03410_2.00 Known CisBP GGGGTCAAAGGTCA Direct PWM Open · Scan
M03411_2.00 Known CisBP GGGGTCATGACCTC Direct PWM Open · Scan
M05671_2.00 Known CisBP GGGGTCAAAGGTCAC Direct PWM Open · Scan
M05672_2.00 Known CisBP GAGGTCAAAGGTCAA Direct PWM Open · Scan
M05882_2.00 Known CisBP GAGGTCAAAGGTCAA Direct PWM Open · Scan
M07993_2.00 Known CisBP AGAGGTCA Direct PWM Open · Scan
M07994_2.00 Known CisBP GGGCAAAGGTCAGGG Direct PWM Open · Scan
M09294_2.00 Known CisBP GGGGGAGGCAGAGGTCAGAG Direct PWM Open · Scan
RXRA_HUMAN.H11MO.0.A Known HOCOMOCO GGGGGAGGCAGAGGTCAGAG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 462 aa
129-209

Region 129-209 0 PWM

Residues
81 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1BY4
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 129-2091 model
Actions
Predicted = Low DIMER_P19793:129:209_1by4_B_1 1by4 129-209 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
18-127PF11825Nuclear/hormone receptor activator site AF-1No overlap with loaded model regions
134-202PF00105Double treble clef zinc finger, C4 typeoverlaps 129-209
265-441PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions