ModCRE DB

Transcription factor

P19838 - NFKB1

Nuclear factor NF-kappa-B p105 subunit (DNA-binding factor KBF1) (EBP-1) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1) [Cleaved into: Nuclear factor NF-kappa-B p50 subunit]

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 968 aa

11 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known11
MotifPredictionSourceDNA bindingSupportLogoActions
MA0105.1 Known JASPAR GGGAATTTCC Direct PWM Open · Scan
MA0105.2 Known JASPAR GGGGATTCCCC Direct PWM Open · Scan
MA0105.3 Known JASPAR GGGAATTTCCC Direct PWM Open · Scan
MA0105.4 Known JASPAR AGGGGAATCCCCT Direct PWM Open · Scan
M03448_2.00 Known CisBP AGGGGATTCCCCT Direct PWM Open · Scan
M05887_2.00 Known CisBP GGGGGCTTCCCCC Direct PWM Open · Scan
M09348_2.00 Known CisBP ATTTCCCT Direct PWM Open · Scan
M11228_2.00 Known CisBP GGGGATTCCC Direct PWM Open · Scan
M11229_2.00 Known CisBP GGGGACTTTCCA Direct PWM Open · Scan
M11230_2.00 Known CisBP AGGGGAATTTCCCC Direct PWM Open · Scan
NFKB1_HUMAN.H11MO.1.B Known HOCOMOCO GGGAAATTCCC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 968 aa
41-351

Region 41-351 0 PWM

Residues
311 aa
Domains
PF00554 · Rel homology DNA-binding domain PF16179 · Rel homology dimerisation domain
3D models
1 active PDB
Templates
1A3Q
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 41-3511 model
Actions
Predicted = Low DIMER_P19838:41:351_1a3q_B_1 1a3q 41-351 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
44-242PF00554Rel homology DNA-binding domainoverlaps 41-351
251-352PF16179Rel homology dimerisation domainoverlaps 41-351
586-680PF12796Ankyrin repeats (3 copies)No overlap with loaded model regions
683-747PF12796Ankyrin repeats (3 copies)No overlap with loaded model regions
818-891PF00531Death domainNo overlap with loaded model regions