ModCRE DB

Transcription factor

P20226 - TBP

TATA-box-binding protein (TATA sequence-binding protein) (TATA-binding factor) (TATA-box factor) (Transcription initiation factor TFIID TBP subunit)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 339 aa

9 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known9
MotifPredictionSourceDNA bindingSupportLogoActions
MA0108.2 Known JASPAR GTATAAAAGGCGGGG Direct PWM Open · Scan
MA0108.3 Known JASPAR TATAAAA Direct PWM Open · Scan
M08231_2.00 Known CisBP TATTTGCATA Direct PWM Open · Scan
M09432_2.00 Known CisBP CTATAAAAGG Direct PWM Open · Scan
M11388_2.00 Known CisBP GTATAAAAGGCGGGG Direct PWM Open · Scan
M11389_2.00 Known CisBP TCTATAAAAG Direct PWM Open · Scan
M11390_2.00 Known CisBP TATAAATA Direct PWM Open · Scan
M11491_2.00 Known CisBP GTATAAAAGGCGGGG Direct PWM Open · Scan
TBP_HUMAN.H11MO.0.A Known HOCOMOCO CTATAAAAGG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 339 aa
153-337

Region 153-337 0 PWM

Residues
185 aa
Domains
PF00352 · Transcription factor TFIID (or TATA-binding protein, TBP) PF00352 · Transcription factor TFIID (or TATA-binding protein, TBP)
3D models
1 active PDB
Templates
5IY6
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 153-3371 model
Actions
Predicted = Low TFS_P20226:153:337_5iy6_P_1 5iy6 153-337 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
163-244PF00352Transcription factor TFIID (or TATA-binding protein, TBP)overlaps 153-337
252-334PF00352Transcription factor TFIID (or TATA-binding protein, TBP)overlaps 153-337