ModCRE DB

Transcription factor

P20823 - HNF1A

Hepatocyte nuclear factor 1-alpha (HNF-1-alpha) (HNF-1A) (Liver-specific transcription factor LF-B1) (LFB1) (Transcription factor 1) (TCF-1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 631 aa

11 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known7
MotifPredictionSourceDNA bindingSupportLogoActions
MA0046.1 Known JASPAR GGTTAATAATTAAC Direct PWM Open · Scan
MA0046.2 Known JASPAR AGTTAATGATTAACT Direct PWM Open · Scan
MA0046.3 Known JASPAR GTTAATGATTAAC Direct PWM Open · Scan
M03150_2.00 Known CisBP AGTTAATCATTAACT Direct PWM Open · Scan
M10690_2.00 Known CisBP GGTTAATAATTACCA Direct PWM Open · Scan
M10693_2.00 Known CisBP AGTTAATTATTAACCAA Direct PWM Open · Scan
HNF1A_HUMAN.H11MO.0.C Known HOCOMOCO GGTTAATGATTAACT Direct PWM Open · Scan
Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
M09144_2.00 NN 70+% CisBP GGTTAATGATTAACT 95.3% identity Open · Scan
M00171_2.00 NN 70+% CisBP TTAACTAG 94.7% identity Open · Scan
M00408_2.00 NN 70+% CisBP TTAACCAG 82.3% identity Open · Scan
Nearest Neighbor (70% - 40%)1
MotifPredictionSourceDNA bindingSupportLogoActions
MA0153.1 NN 70-40% JASPAR TTAATATTTAAC 53.3% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 631 aa
200-240

Region 200-240 0 PWM

Residues
41 aa
Domains
No overlapping PFAM annotation recorded
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 200-2401 model
Actions
Predicted = Low DIMER_P20823:200:240_1fjl_B_1 1fjl 200-240 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
8-168PF04814Hepatocyte nuclear factor 1 (HNF-1), N terminusNo overlap with loaded model regions
282-540PF04812Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminusNo overlap with loaded model regions
542-630PF04813Hepatocyte nuclear factor 1 (HNF-1), alpha isoform C terminusNo overlap with loaded model regions