ModCRE DB

Transcription factor

P22670 - RFX1

MHC class II regulatory factor RFX1 (Enhancer factor C) (EF-C) (Regulatory factor X 1) (RFX) (Transcription factor RFX1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 979 aa

15 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known6
MotifPredictionSourceDNA bindingSupportLogoActions
M05723_2.00 Known CisBP CGTTGCCATGGCAACG Direct PWM Open · Scan
M05724_2.00 Known CisBP CGTTGCCATGGCAACG Direct PWM Open · Scan
M09363_2.00 Known CisBP GCCCCGGTTGCCATGGCGACGG Direct PWM Open · Scan
M11246_2.00 Known CisBP TTGTTGCCAGGCTACTA Direct PWM Open · Scan
M11247_2.00 Known CisBP TTGTTGCCATGGCTACTA Direct PWM Open · Scan
RFX1_HUMAN.H11MO.0.B Known HOCOMOCO GCCCCGGTTGCCATGGCGACGG Direct PWM Open · Scan
Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
MA0509.1 NN 70+% JASPAR GTTGCCATGGCAAC 90.7% identity Open · Scan
Nearest Neighbor (70% - 40%)8
MotifPredictionSourceDNA bindingSupportLogoActions
M02451_2.00 NN 70-40% CisBP GTTGCCATGG 62.5% identity Open · Scan
MA0798.1 NN 70-40% JASPAR CGTTGCCATGGCAACG 60.0% identity Open · Scan
M03463_2.00 NN 70-40% CisBP GGTTGCCATGGCAACG 59.9% identity Open · Scan
M02454_2.00 NN 70-40% CisBP CGTTGCTAAG 59.0% identity Open · Scan
M09366_2.00 NN 70-40% CisBP TCCCGTTGCCATGGCAACCGCC 57.7% identity Open · Scan
MA0600.1 NN 70-40% JASPAR GTTGCCATGGCAACCGCGG 56.1% identity Open · Scan
M03963_2.00 NN 70-40% CisBP GTTGCTAGGCAAC 54.5% identity Open · Scan
M02450_2.00 NN 70-40% CisBP CGTTGCTAAG 53.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

AF3 model assignments
Validated exact-accession AF3 models stored in local staging. Confidence artifacts are indexed but not visualized yet.
1 active AF3 model
TypeModelResidues / fragmentInterfaceConfidence filesActions
AF3 full-length model P22670_model.cif Full sequence PASS_NONEMPTY_PROTEIN_DNA_INTERFACE 3 indexed View model · mmCIF

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomain
217-374PF04589RFX1 transcription activation region
437-512PF02257RFX DNA-binding domain
608-896PF25340RFX BCD domain