ModCRE DB

Transcription factor

P23760 - PAX3

Paired box protein Pax-3 (HuP2)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 479 aa

22 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known22
MotifPredictionSourceDNA bindingSupportLogoActions
MA0780.1 Known JASPAR TAATCGATTA Direct PWM Open · Scan
MA1546.1 Known JASPAR CCGTCACGCTAATTAA Direct PWM Open · Scan
MA1546.2 Known JASPAR CGTCACGCTAATTA Direct PWM Open · Scan
M00352_2.00 Known CisBP GTTAATTG Direct PWM Open · Scan
M00353_2.00 Known CisBP ACCGATTAC Direct PWM Open · Scan
M00354_2.00 Known CisBP CCGATTA Direct PWM Open · Scan
M00355_2.00 Known CisBP CCAATTAGC Direct PWM Open · Scan
M00356_2.00 Known CisBP ATTACATGGTA Direct PWM Open · Scan
M00357_2.00 Known CisBP CCAATTAGC Direct PWM Open · Scan
M00358_2.00 Known CisBP GATTAGC Direct PWM Open · Scan
M00359_2.00 Known CisBP ATAATTGG Direct PWM Open · Scan
M03297_2.00 Known CisBP TAATCGATTA Direct PWM Open · Scan
M03885_2.00 Known CisBP GATAATTGATTATC Direct PWM Open · Scan
M03886_2.00 Known CisBP AATTAGTCACGGT Direct PWM Open · Scan
M05438_2.00 Known CisBP CCGTCACGCTAATTAA Direct PWM Open · Scan
M05439_2.00 Known CisBP CTAATCAATTAG Direct PWM Open · Scan
M05440_2.00 Known CisBP GCAATTAGTCACGGTT Direct PWM Open · Scan
M05441_2.00 Known CisBP TCGTCACGCTAATTAA Direct PWM Open · Scan
M05442_2.00 Known CisBP ATAATCAATTAG Direct PWM Open · Scan
M05443_2.00 Known CisBP TCAATTAGTCACGGTT Direct PWM Open · Scan
M09585_2.00 Known CisBP ACCGTGACTAATTGA Direct PWM Open · Scan
M10816_2.00 Known CisBP TCGTCACGCTTCA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 479 aa
218-277

Region 218-277 0 PWM

Residues
60 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 218-2771 model
Actions
Predicted = Low DIMER_P23760:218:277_1fjl_A_1 1fjl 218-277 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
34-159PF00292'Paired box' domainNo overlap with loaded model regions
220-276PF00046Homeodomainoverlaps 218-277
347-391PF12360Paired box protein 7No overlap with loaded model regions