ModCRE DB

Transcription factor

P26367 - PAX6

Paired box protein Pax-6 (Aniridia type II protein) (Oculorhombin)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 422 aa

20 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known20
MotifPredictionSourceDNA bindingSupportLogoActions
MA0069.1 Known JASPAR TTCACGCATGAGTT Direct PWM Open · Scan
M00335_2.00 Known CisBP CAGGGGGG Direct PWM Open · Scan
M00336_2.00 Known CisBP GTGCACAC Direct PWM Open · Scan
M00337_2.00 Known CisBP GCTAATTAATG Direct PWM Open · Scan
M00338_2.00 Known CisBP ACGAAAGA Direct PWM Open · Scan
M00339_2.00 Known CisBP GACACGGCGGAGC Direct PWM Open · Scan
M00340_2.00 Known CisBP AATTCAC Direct PWM Open · Scan
M00341_2.00 Known CisBP CTCCCCGGGC Direct PWM Open · Scan
M00342_2.00 Known CisBP TGTGCTAATTAATG Direct PWM Open · Scan
M00343_2.00 Known CisBP TAGTCCCGTCCTG Direct PWM Open · Scan
M00344_2.00 Known CisBP ATAGAGGCTACC Direct PWM Open · Scan
M02689_2.00 Known CisBP TTCACGCATGAGTT Direct PWM Open · Scan
M03291_2.00 Known CisBP TTTCACGCATGACTGCACA Direct PWM Open · Scan
M05412_2.00 Known CisBP TCACGCATGACTGCACA Direct PWM Open · Scan
M05413_2.00 Known CisBP TCACGCATGACTGCACA Direct PWM Open · Scan
M05414_2.00 Known CisBP TCACGCATGACTGCGCA Direct PWM Open · Scan
M05415_2.00 Known CisBP TCACGCATCACTGCACA Direct PWM Open · Scan
M09216_2.00 Known CisBP TTCCGCTTGACT Direct PWM Open · Scan
M10806_2.00 Known CisBP AATTTTCACGCATGAGTTCAC Direct PWM Open · Scan
PAX6_HUMAN.H11MO.0.C Known HOCOMOCO TTCCGCTTGACT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 422 aa
209-268

Region 209-268 0 PWM

Residues
60 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 209-2681 model
Actions
Predicted = Low DIMER_P26367:209:268_1fjl_A_1 1fjl 209-268 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
4-128PF00292'Paired box' domainNo overlap with loaded model regions
212-267PF00046Homeodomainoverlaps 209-268