Transcription factor

P28356 - HOXD9

Homeobox protein Hox-D9 (Homeobox protein Hox-4C) (Homeobox protein Hox-5.2)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 352 aa

10 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known10

Motif	Prediction	Source	DNA binding	Support	Actions
MA0913.2	Known	JASPAR	GCAATAAAAC	Direct PWM	Open · Scan
MA0913.3	Known	JASPAR	GCAATAAAA	Direct PWM	Open · Scan
M05104_2.00	Known	CisBP	TTTTTATTGC	Direct PWM	Open · Scan
M05105_2.00	Known	CisBP	GTCGTAAAAT	Direct PWM	Open · Scan
M05106_2.00	Known	CisBP	GTTTTATTGC	Direct PWM	Open · Scan
M05107_2.00	Known	CisBP	GTCGTAAAAC	Direct PWM	Open · Scan
M05108_2.00	Known	CisBP	GTCGTAAAAC	Direct PWM	Open · Scan
M05109_2.00	Known	CisBP	GTTTTATTGC	Direct PWM	Open · Scan
M05110_2.00	Known	CisBP	GTCGTAAAAC	Direct PWM	Open · Scan
M05111_2.00	Known	CisBP	GTTTTATTGC	Direct PWM	Open · Scan

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 352 aa

279-342

Scan this region Show models

3D Models

Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.

1 active PDB model

Region 279-3421 model

				Actions
Predicted = Low	DIMER_P28356:279:342_5zjs_A_1	5zjs	279-342	View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

Residues	PFAM	Domain	Used by prediction region?
11-200	PF04617	Hox9 activation region	No overlap with loaded model regions
286-342	PF00046	Homeodomain	overlaps 279-342