ModCRE DB

Transcription factor

P28360 - MSX1

Homeobox protein MSX-1 (Homeobox protein Hox-7) (Msh homeobox 1-like protein)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 303 aa

13 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known13
MotifPredictionSourceDNA bindingSupportLogoActions
MA0666.1 Known JASPAR CCAATTAG Direct PWM Open · Scan
MA0666.2 Known JASPAR CCAATTAA Direct PWM Open · Scan
MA0666.3 Known JASPAR CAATTA Direct PWM Open · Scan
M03184_2.00 Known CisBP TAATTGGTTTTTAATTGC Direct PWM Open · Scan
M03185_2.00 Known CisBP TTAATTGG Direct PWM Open · Scan
M03186_2.00 Known CisBP CTAATTGG Direct PWM Open · Scan
M05221_2.00 Known CisBP GTAATTGC Direct PWM Open · Scan
M05222_2.00 Known CisBP CTAATTGC Direct PWM Open · Scan
M05223_2.00 Known CisBP ATAACGAT Direct PWM Open · Scan
M05224_2.00 Known CisBP GTAATTGG Direct PWM Open · Scan
M05225_2.00 Known CisBP GTAATTGG Direct PWM Open · Scan
M05226_2.00 Known CisBP TTAACGAG Direct PWM Open · Scan
M10715_2.00 Known CisBP CCGTAATTG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 303 aa
173-228

Region 173-228 0 PWM

Residues
56 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
2HDD
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 173-2281 model
Actions
Predicted = Low DIMER_P28360:173:228_2hdd_B_1 2hdd 173-228 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
173-229PF00046Homeodomainoverlaps 173-228