ModCRE DB

Transcription factor

P28702 - RXRB

Retinoic acid receptor RXR-beta (Nuclear receptor subfamily 2 group B member 2) (Retinoid X receptor beta)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 533 aa

9 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known9
MotifPredictionSourceDNA bindingSupportLogoActions
MA0855.1 Known JASPAR GGGGTCAAAGGTCA Direct PWM Open · Scan
MA1555.1 Known JASPAR GAGGTCATGACCTC Direct PWM Open · Scan
M03415_2.00 Known CisBP GGGGTCAAAGGTCA Direct PWM Open · Scan
M05681_2.00 Known CisBP GAGGTCAAAGGTCAC Direct PWM Open · Scan
M05682_2.00 Known CisBP GAGGTCATGACCTC Direct PWM Open · Scan
M05683_2.00 Known CisBP GGGGTCAAAGGTCAT Direct PWM Open · Scan
M05684_2.00 Known CisBP GAGGTCACGACCTC Direct PWM Open · Scan
M09297_2.00 Known CisBP TGAGGTCACA Direct PWM Open · Scan
RXRB_HUMAN.H11MO.0.C Known HOCOMOCO TGAGGTCACA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 533 aa
202-278

Region 202-278 0 PWM

Residues
77 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
6FBR
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 202-2781 model
Actions
Predicted = Low DIMER_P28702:202:278_6fbr_A_1 6fbr 202-278 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
204-272PF00105Double treble clef zinc finger, C4 typeoverlaps 202-278
336-512PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions