ModCRE DB

Transcription factor

P29374 - ARID4A

AT-rich interactive domain-containing protein 4A (ARID domain-containing protein 4A) (Retinoblastoma-binding protein 1) (RBBP-1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1257 aa

3 Generated PWM 3 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE3
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_P29374_ARI4A_HUMAN:308:397_1kqq_A_1 ModCRE Homology model AAATTTTATTGT Region 308-397 · 1 3D model Open · Scan
TFS_sp_P29374_ARI4A_HUMAN:315:401_2oeh_A_1 ModCRE Homology model ATTTTTAAAATAC Region 315-401 · 1 3D model Open · Scan
TFS_sp_P29374_ARI4A_HUMAN:587:660_8jho_M_1 ModCRE Homology model CAAAACGGCTTGATAACAAAAACCAAAAATAAAACTACAAAAAAAAAAAAAAAAAAAAAAGACAAAAATCACTAAGTATTTGTTTAAACGTT Region 587-660 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1257 aa
308-401
587-660

Region 308-401 2 PWM

Residues
94 aa
Domains
PF01388 · ARID/BRIGHT DNA binding domain
3D models
2 active PDBs · 2 summary rows
Templates
1KQQ, 2OEH
Sources
Predicted = Low
Scan this region Show models

Region 587-660 1 PWM

Residues
74 aa
Domains
PF11717 · RNA binding activity-knot of a chromodomain
3D models
1 active PDB · 1 summary row
Templates
8JHO
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
3 active PDB models 3 summary rows
Region 308-4012 models · 2 summary rows
Actions
Predicted = Low TFS_sp_P29374_ARI4A_HUMAN:308:397_1kqq_A_1 1kqq 308-397 View model · PDB
Predicted = Low TFS_sp_P29374_ARI4A_HUMAN:315:401_2oeh_A_1 2oeh 315-401 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1kqq 308:401 308 397 P:A · DNA:B,C 36.7% / 63.3% 68 View · PDB TFS_sp_P29374_ARI4A_HUMAN:308:397_1kqq_A_1
2 2oeh 308:401 315 401 P:A · DNA:B,C 33.3% / 58.6% 81 View · PDB TFS_sp_P29374_ARI4A_HUMAN:315:401_2oeh_A_1
Region 587-6601 model · 1 summary row
Actions
Predicted = Low TFS_sp_P29374_ARI4A_HUMAN:587:660_8jho_M_1 8jho 587-660 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
3 8jho 308:401 587 660 P:M · DNA:I,J 30.7% / 53.3% 24 View · PDB TFS_sp_P29374_ARI4A_HUMAN:587:660_8jho_M_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
170-262PF08169RBB1NT (NUC162) domainNo overlap with loaded model regions
311-397PF01388ARID/BRIGHT DNA binding domainoverlaps 308-401
576-628PF11717RNA binding activity-knot of a chromodomainoverlaps 587-660