ModCRE DB

Transcription factor

P31249 - HOXD3

Homeobox protein Hox-D3 (Homeobox protein Hox-4A)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 432 aa

4 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known4
MotifPredictionSourceDNA bindingSupportLogoActions
MA0912.2 Known JASPAR CTAATTAC Direct PWM Open · Scan
M05101_2.00 Known CisBP CTAATTAC Direct PWM Open · Scan
M05102_2.00 Known CisBP CTAATGAC Direct PWM Open · Scan
M05103_2.00 Known CisBP CTAATTAC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 432 aa
195-254

Region 195-254 0 PWM

Residues
60 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
5ZJR
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 195-2541 model
Actions
Predicted = Low DIMER_P31249:195:254_5zjr_A_1 5zjr 195-254 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
195-251PF00046Homeodomainoverlaps 195-254
370-430PF13293Domain of unknown function (DUF4074)No overlap with loaded model regions