ModCRE DB

Transcription factor

P31271 - HOXA13

Homeobox protein Hox-A13 (Homeobox protein Hox-1J)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 388 aa

16 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known16
MotifPredictionSourceDNA bindingSupportLogoActions
MA0650.1 Known JASPAR CCAATAAAAA Direct PWM Open · Scan
MA0650.2 Known JASPAR CCCAATAAAAC Direct PWM Open · Scan
M03098_2.00 Known CisBP GTTTTATTGG Direct PWM Open · Scan
M03099_2.00 Known CisBP GCTCGTAAAAC Direct PWM Open · Scan
M03100_2.00 Known CisBP TTTTTATTGG Direct PWM Open · Scan
M03101_2.00 Known CisBP TCTCGTAAAAA Direct PWM Open · Scan
M04977_2.00 Known CisBP GTTTTATTGGG Direct PWM Open · Scan
M04978_2.00 Known CisBP GCTCGTAAAAC Direct PWM Open · Scan
M04979_2.00 Known CisBP GTTTTATTGGT Direct PWM Open · Scan
M04980_2.00 Known CisBP GCTCGTAAAAC Direct PWM Open · Scan
M04981_2.00 Known CisBP GTTTTATTGGG Direct PWM Open · Scan
M04982_2.00 Known CisBP GCTCGTAAAAC Direct PWM Open · Scan
M04983_2.00 Known CisBP GTTTTATTGGT Direct PWM Open · Scan
M04984_2.00 Known CisBP GCTCGTAAAAC Direct PWM Open · Scan
M09134_2.00 Known CisBP GGTTTTATTGG Direct PWM Open · Scan
HXA13_HUMAN.H11MO.0.C Known HOCOMOCO GGTTTTATTGG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 388 aa
323-379

Region 323-379 0 PWM

Residues
57 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
5ZJR
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 323-3791 model
Actions
Predicted = Low DIMER_P31271:323:379_5zjr_A_1 5zjr 323-379 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
145-224PF12284Hox protein A13 N terminalNo overlap with loaded model regions
323-379PF00046Homeodomainoverlaps 323-379