ModCRE DB

Transcription factor

P31274 - HOXC9

Homeobox protein Hox-C9 (Homeobox protein Hox-3B)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 260 aa

8 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known8
MotifPredictionSourceDNA bindingSupportLogoActions
MA0485.2 Known JASPAR GTCGTAAAAT Direct PWM Open · Scan
MA0485.3 Known JASPAR GTCGTAAAA Direct PWM Open · Scan
M05331_2.00 Known CisBP GTCGTAAAAT Direct PWM Open · Scan
M05332_2.00 Known CisBP GTTTTATTGC Direct PWM Open · Scan
M05333_2.00 Known CisBP GTCGTAAAAC Direct PWM Open · Scan
M05334_2.00 Known CisBP GTTTTATTGC Direct PWM Open · Scan
M09161_2.00 Known CisBP TTTTATTGCC Direct PWM Open · Scan
HXC9_HUMAN.H11MO.0.C Known HOCOMOCO TTTTATTGCC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 260 aa
186-249

Region 186-249 0 PWM

Residues
64 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
5ZJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 186-2491 model
Actions
Predicted = Low DIMER_P31274:186:249_5zjq_A_1 5zjq 186-249 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
1-179PF04617Hox9 activation regionNo overlap with loaded model regions
193-249PF00046Homeodomainoverlaps 186-249