ModCRE DB

Transcription factor

P31277 - HOXD11

Homeobox protein Hox-D11 (Homeobox protein Hox-4F)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 338 aa

6 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known6
MotifPredictionSourceDNA bindingSupportLogoActions
MA0908.1 Known JASPAR GTCGTAAAAA Direct PWM Open · Scan
MA0908.2 Known JASPAR GTCGTAAAA Direct PWM Open · Scan
M03139_2.00 Known CisBP GTCGTAAAAA Direct PWM Open · Scan
M03140_2.00 Known CisBP TTTTATTACC Direct PWM Open · Scan
M05120_2.00 Known CisBP GGTCGTAAAACTTTAT Direct PWM Open · Scan
M05121_2.00 Known CisBP GGTCGTAAAACTTTAT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 338 aa
267-323

Region 267-323 0 PWM

Residues
57 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
5ZJR
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 267-3231 model
Actions
Predicted = Low DIMER_P31277:267:323_5zjr_A_1 5zjr 267-323 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
26-77PF12045Protein of unknown function (DUF3528)No overlap with loaded model regions
116-187PF12045Protein of unknown function (DUF3528)No overlap with loaded model regions
267-323PF00046Homeodomainoverlaps 267-323