ModCRE DB

Transcription factor

P32242 - OTX1

Homeobox protein OTX1 (Orthodenticle homolog 1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 354 aa

8 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known8
MotifPredictionSourceDNA bindingSupportLogoActions
MA0711.1 Known JASPAR TTAATCCG Direct PWM Open · Scan
MA0711.2 Known JASPAR TAATCC Direct PWM Open · Scan
M03116_2.00 Known CisBP GTTAATCGGATTAAC Direct PWM Open · Scan
M03117_2.00 Known CisBP TTAATCCG Direct PWM Open · Scan
M05022_2.00 Known CisBP CTAATCCG Direct PWM Open · Scan
M05023_2.00 Known CisBP CTAATCCC Direct PWM Open · Scan
M05024_2.00 Known CisBP TTAATCCGCT Direct PWM Open · Scan
M05025_2.00 Known CisBP CTAATCCCCT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 354 aa
37-101

Region 37-101 0 PWM

Residues
65 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 37-1011 model
Actions
Predicted = Low DIMER_P32242:37:101_1fjl_A_1 1fjl 37-101 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
39-95PF00046Homeodomainoverlaps 37-101
178-279PF03529Otx1 transcription factorNo overlap with loaded model regions