ModCRE DB

Transcription factor

P35398 - RORA

Nuclear receptor ROR-alpha (Nuclear receptor RZR-alpha) (Nuclear receptor subfamily 1 group F member 1) (RAR-related orphan receptor A) (Retinoid-related orphan receptor-alpha)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 523 aa

11 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known11
MotifPredictionSourceDNA bindingSupportLogoActions
MA0071.1 Known JASPAR ATCAAGGTCA Direct PWM Open · Scan
MA0072.1 Known JASPAR TATAAGTAGGTCAA Direct PWM Open · Scan
MA0072.2 Known JASPAR TAAGTAGGTCA Direct PWM Open · Scan
M02705_2.00 Known CisBP ATCAAGGTCA Direct PWM Open · Scan
M02706_2.00 Known CisBP TATAAGTAGGTCAA Direct PWM Open · Scan
M03353_2.00 Known CisBP CAAAGGTCAAATTGAGGTCA Direct PWM Open · Scan
M03354_2.00 Known CisBP TAACTAGGTTAGTAGGTCA Direct PWM Open · Scan
M09265_2.00 Known CisBP AACTAGGTCAGGG Direct PWM Open · Scan
M11090_2.00 Known CisBP ATATCAAGGTCAT Direct PWM Open · Scan
M11091_2.00 Known CisBP ATAAGTAGGTCAA Direct PWM Open · Scan
RORA_HUMAN.H11MO.0.C Known HOCOMOCO AACTAGGTCAGGG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 523 aa
70-147

Region 70-147 0 PWM

Residues
78 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1HLZ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 70-1471 model
Actions
Predicted = Low DIMER_P35398:70:147_1hlz_B_1 1hlz 70-147 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
72-140PF00105Double treble clef zinc finger, C4 typeoverlaps 70-147
327-492PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions