ModCRE DB

Transcription factor

P35453 - HOXD13

Homeobox protein Hox-D13 (Homeobox protein Hox-4I)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 343 aa

16 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known16
MotifPredictionSourceDNA bindingSupportLogoActions
MA0909.1 Known JASPAR CCAATAAAAA Direct PWM Open · Scan
MA0909.2 Known JASPAR CCCAATAAAAC Direct PWM Open · Scan
M00293_2.00 Known CisBP TTTTATGAGC Direct PWM Open · Scan
M00294_2.00 Known CisBP TCGTAAAA Direct PWM Open · Scan
M00295_2.00 Known CisBP TTTTATGAG Direct PWM Open · Scan
M00296_2.00 Known CisBP GTATAAAA Direct PWM Open · Scan
M00297_2.00 Known CisBP TTTTATACGC Direct PWM Open · Scan
M00298_2.00 Known CisBP TTTTATTGG Direct PWM Open · Scan
M00299_2.00 Known CisBP TTTTATGAG Direct PWM Open · Scan
M00300_2.00 Known CisBP TTTTATTA Direct PWM Open · Scan
M03141_2.00 Known CisBP TTTTTATTGG Direct PWM Open · Scan
M03142_2.00 Known CisBP GCTCGTAAAAC Direct PWM Open · Scan
M05122_2.00 Known CisBP GTTTTATTGGG Direct PWM Open · Scan
M05123_2.00 Known CisBP GCTCGTAAAAC Direct PWM Open · Scan
M05124_2.00 Known CisBP GTTTTATTGGT Direct PWM Open · Scan
M05125_2.00 Known CisBP GCTCGTAAAAC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 343 aa
277-333

Region 277-333 0 PWM

Residues
57 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
5ZJR
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 277-3331 model
Actions
Predicted = Low DIMER_P35453:277:333_5zjr_A_1 5zjr 277-333 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
84-173PF12284Hox protein A13 N terminalNo overlap with loaded model regions
277-333PF00046Homeodomainoverlaps 277-333