ModCRE DB

Transcription factor

P35712 - SOX6

Transcription factor SOX-6

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 828 aa

27 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
MA0515.1 NN 70+% JASPAR CCATTGTTTT 96.8% identity Open · Scan
M05892_2.00 NN 70+% CisBP AAACAATAGA 93.4% identity Open · Scan
M03981_2.00 NN 70+% CisBP ATTGTTCGGTGGT 77.8% identity Open · Scan
Nearest Neighbor (70% - 40%)24
MotifPredictionSourceDNA bindingSupportLogoActions
MA0869.1 NN 70-40% JASPAR AACAATTTCAGTGTT 60.5% identity Open · Scan
M09408_2.00 NN 70-40% CisBP TTTTGTTTT 58.6% identity Open · Scan
M09410_2.00 NN 70-40% CisBP TCCTTTGTTCTC 57.8% identity Open · Scan
MA0867.1 NN 70-40% JASPAR GAACAATTGCAGTGTT 57.8% identity Open · Scan
MA1561.1 NN 70-40% JASPAR ACCGAACAATG 57.8% identity Open · Scan
MA1562.1 NN 70-40% JASPAR CCGAACAATG 57.8% identity Open · Scan
M11309_2.00 NN 70-40% CisBP TTAACAATAC 57.2% identity Open · Scan
MA0087.1 NN 70-40% JASPAR ATTGTTA 56.5% identity Open · Scan
M03983_2.00 NN 70-40% CisBP AAACAATTTCAGTGTTT 56.4% identity Open · Scan
M03508_2.00 NN 70-40% CisBP AACAATAACATTGTT 56.0% identity Open · Scan
MA1152.1 NN 70-40% JASPAR CTATTGTTTT 56.0% identity Open · Scan
M02488_2.00 NN 70-40% CisBP CATTGTTTTC 55.7% identity Open · Scan
MA0078.1 NN 70-40% JASPAR CTCATTGTC 55.5% identity Open · Scan
MA0084.1 NN 70-40% JASPAR GTAAACAAT 54.6% identity Open · Scan
MA1563.1 NN 70-40% JASPAR CACAATGC 54.2% identity Open · Scan
MA0866.1 NN 70-40% JASPAR AACAATGGTAGTGTT 53.9% identity Open · Scan
M09694_2.00 NN 70-40% CisBP AACAATGGAC 53.8% identity Open · Scan
M09404_2.00 NN 70-40% CisBP TAACAATA 53.2% identity Open · Scan
M03979_2.00 NN 70-40% CisBP AAACAATAACATTGTTT 53.1% identity Open · Scan
MA0142.1 NN 70-40% JASPAR CTTTGTTATGCAAAT 53.1% identity Open · Scan
MA0143.4 NN 70-40% JASPAR AAACAATGGAA 53.1% identity Open · Scan
M00204_2.00 NN 70-40% CisBP AAAACAAT 53.0% identity Open · Scan
M03516_2.00 NN 70-40% CisBP AACAATGTTCATTGTT 52.3% identity Open · Scan
M03974_2.00 NN 70-40% CisBP AACAATAACATTGTT 51.2% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 828 aa
618-695

Region 618-695 0 PWM

Residues
78 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
1 active PDB
Templates
1J46
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 618-6951 model
Actions
Predicted = Low TFS_P35712:618:695_1j46_A_1 1j46 618-695 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
621-689PF00505HMG (high mobility group) boxoverlaps 618-695