ModCRE DB

Transcription factor

P35713 - SOX18

Transcription factor SOX-18

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 384 aa

7 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known7
MotifPredictionSourceDNA bindingSupportLogoActions
MA1563.1 Known JASPAR CACAATGC Direct PWM Open · Scan
MA1563.2 Known JASPAR AACAATTC Direct PWM Open · Scan
M03529_2.00 Known CisBP AACAATTTCATTGTT Direct PWM Open · Scan
M03530_2.00 Known CisBP ATCAATTGCATTGAT Direct PWM Open · Scan
M03531_2.00 Known CisBP ATGAATTCCATTCAT Direct PWM Open · Scan
M05791_2.00 Known CisBP CACAATGC Direct PWM Open · Scan
M05792_2.00 Known CisBP GCATTGTT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 384 aa
82-159

Region 82-159 0 PWM

Residues
78 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
1 active PDB
Templates
1J46
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 82-1591 model
Actions
Predicted = Low TFS_P35713:82:159_1j46_A_1 1j46 82-159 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
86-153PF00505HMG (high mobility group) boxoverlaps 82-159
197-246PF12067Sox 17/18 central domainNo overlap with loaded model regions