ModCRE DB

Transcription factor

P35716 - SOX11

Transcription factor SOX-11

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 441 aa

36 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
MA0869.1 NN 70+% JASPAR AACAATTTCAGTGTT 78.7% identity Open · Scan
M02488_2.00 NN 70+% CisBP CATTGTTTTC 70.6% identity Open · Scan
Nearest Neighbor (70% - 40%)34
MotifPredictionSourceDNA bindingSupportLogoActions
M09694_2.00 NN 70-40% CisBP AACAATGGAC 69.6% identity Open · Scan
M03983_2.00 NN 70-40% CisBP AAACAATTTCAGTGTTT 69.2% identity Open · Scan
MA0866.1 NN 70-40% JASPAR AACAATGGTAGTGTT 67.9% identity Open · Scan
M03538_2.00 NN 70-40% CisBP AAACAATGACATTGTTT 67.5% identity Open · Scan
M05769_2.00 NN 70-40% CisBP CCATTGTGAG 67.5% identity Open · Scan
MA0514.1 NN 70-40% JASPAR CCTTTGTTTT 67.5% identity Open · Scan
M03979_2.00 NN 70-40% CisBP AAACAATAACATTGTTT 66.6% identity Open · Scan
MA1562.1 NN 70-40% JASPAR CCGAACAATG 66.2% identity Open · Scan
M03508_2.00 NN 70-40% CisBP AACAATAACATTGTT 64.9% identity Open · Scan
MA1152.1 NN 70-40% JASPAR CTATTGTTTT 64.9% identity Open · Scan
MA0870.1 NN 70-40% JASPAR AACAATAACATTGTT 63.6% identity Open · Scan
M03516_2.00 NN 70-40% CisBP AACAATGTTCATTGTT 62.9% identity Open · Scan
M00204_2.00 NN 70-40% CisBP AAAACAAT 62.6% identity Open · Scan
MA1563.1 NN 70-40% JASPAR CACAATGC 62.6% identity Open · Scan
M03533_2.00 NN 70-40% CisBP AACAATTGCATTGTT 62.5% identity Open · Scan
MA0078.1 NN 70-40% JASPAR CTCATTGTC 62.0% identity Open · Scan
M03537_2.00 NN 70-40% CisBP ATGAATTGCAGTCAT 61.8% identity Open · Scan
M09404_2.00 NN 70-40% CisBP TAACAATA 61.8% identity Open · Scan
M11309_2.00 NN 70-40% CisBP TTAACAATAC 61.8% identity Open · Scan
MA0077.1 NN 70-40% JASPAR CCATTGTTC 61.8% identity Open · Scan
MA0087.1 NN 70-40% JASPAR ATTGTTA 61.8% identity Open · Scan
MA0442.1 NN 70-40% JASPAR CTTTGT 61.8% identity Open · Scan
M00212_2.00 NN 70-40% CisBP GAACAATA 61.5% identity Open · Scan
MA1120.1 NN 70-40% JASPAR AAACAATGGCA 61.5% identity Open · Scan
MA0142.1 NN 70-40% JASPAR CTTTGTTATGCAAAT 61.4% identity Open · Scan
MA0143.4 NN 70-40% JASPAR AAACAATGGAA 61.4% identity Open · Scan
M00197_2.00 NN 70-40% CisBP AAAACAAT 60.7% identity Open · Scan
MA0868.1 NN 70-40% JASPAR AACAATGTGCAGTGTT 60.7% identity Open · Scan
M03981_2.00 NN 70-40% CisBP ATTGTTCGGTGGT 60.5% identity Open · Scan
M05892_2.00 NN 70-40% CisBP AAACAATAGA 60.5% identity Open · Scan
MA0515.1 NN 70-40% JASPAR CCATTGTTTT 60.5% identity Open · Scan
M09408_2.00 NN 70-40% CisBP TTTTGTTTT 57.5% identity Open · Scan
MA0084.1 NN 70-40% JASPAR GTAAACAAT 57.5% identity Open · Scan
M03974_2.00 NN 70-40% CisBP AACAATAACATTGTT 57.3% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 441 aa
47-122

Region 47-122 0 PWM

Residues
76 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
1 active PDB
Templates
3U2B
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 47-1221 model
Actions
Predicted = Low TFS_P35716:47:122_3u2b_C_1 3u2b 47-122 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
49-117PF00505HMG (high mobility group) boxoverlaps 47-122