ModCRE DB

Transcription factor

P35789 - ZNF93

Zinc finger protein 93 (Zinc finger protein 505) (Zinc finger protein HTF34)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 620 aa

75 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known3
MotifPredictionSourceDNA bindingSupportLogoActions
MA1721.1 Known JASPAR GGCAGCGGCAGCGGCG Direct PWM Open · Scan
MA1721.2 Known JASPAR GGCAGCGGCAGCGG Direct PWM Open · Scan
M07671_2.00 Known CisBP GGCTGCTGCCCTGCAGCAGGGGCTGCTGCTGCCTCTGCC Direct PWM Open · Scan
Nearest Neighbor (>70%)6
MotifPredictionSourceDNA bindingSupportLogoActions
M00955_2.00 NN 70+% CisBP ACGTCCTCT 77.6% identity Open · Scan
M07687_2.00 NN 70+% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 73.7% identity Open · Scan
M07761_2.00 NN 70+% CisBP CTGATTATTCACCCA 72.0% identity Open · Scan
M08295_2.00 NN 70+% CisBP CTGCTGGAATCTCCA 71.4% identity Open · Scan
M08381_2.00 NN 70+% CisBP ACATTTTGTCCTCCTAGTCCT 71.4% identity Open · Scan
M07715_2.00 NN 70+% CisBP CCGCCGCCGCCGTGG 70.4% identity Open · Scan
Nearest Neighbor (70% - 40%)66
MotifPredictionSourceDNA bindingSupportLogoActions
M07775_2.00 NN 70-40% CisBP GCCGAAACCCGGG 69.5% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 68.7% identity Open · Scan
M08921_2.00 NN 70-40% CisBP CCTCATTCTTCTTGGACATG 68.1% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 68.0% identity Open · Scan
M07565_2.00 NN 70-40% CisBP CCTCTGGGGGCTCGTCCA 67.5% identity Open · Scan
M07575_2.00 NN 70-40% CisBP TCTCCAAGGCGGCCAGCA 66.6% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 64.9% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 64.7% identity Open · Scan
M07586_2.00 NN 70-40% CisBP GGGACCCGGGTGGGGGCGTCCCCC 64.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 63.5% identity Open · Scan
MA1599.1 NN 70-40% JASPAR CGGGCCAAGCCCCTAT 62.7% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 61.3% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 61.3% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 61.2% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 60.7% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 60.2% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 60.2% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 60.0% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 60.0% identity Open · Scan
M07767_2.00 NN 70-40% CisBP AAAAACCCCAGA 59.7% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 59.5% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 59.4% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 59.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 59.0% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 58.7% identity Open · Scan
M06108_2.00 NN 70-40% CisBP ACAACAACAAC 58.1% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 57.9% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 57.3% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 57.2% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 57.2% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 56.8% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 56.2% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 55.9% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 55.1% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 55.0% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 54.4% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 54.3% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 53.7% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 53.5% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 53.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 53.1% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 53.1% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 52.9% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 52.9% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 52.9% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 52.7% identity Open · Scan
M01044_2.00 NN 70-40% CisBP TCTCTCTTTC 52.1% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 51.8% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 51.3% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 51.2% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 51.1% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 51.0% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 51.0% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 50.9% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 50.7% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 50.7% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 50.7% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 50.6% identity Open · Scan
M08859_2.00 NN 70-40% CisBP CATTTTTTCCTCCTAGGCCT 50.6% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 50.5% identity Open · Scan
M00217_2.00 NN 70-40% CisBP TTACTCAATAT 50.0% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.0% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 50.0% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 50.0% identity Open · Scan
M08330_2.00 NN 70-40% CisBP TGGGTGCCGGACTGCTGTTCC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 620 aa
228-504

Region 228-504 0 PWM

Residues
277 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13465 · Zinc-finger double domain PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5V3J
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 228-5041 model
Actions
Predicted = Low TFS_P35789:228:504_5v3j_E_1 5v3j 228-504 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
4-44PF01352KRAB boxNo overlap with loaded model regions
173-195PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
201-223PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
229-251PF00096Zinc finger, C2H2 typeoverlaps 228-504
257-279PF00096Zinc finger, C2H2 typeoverlaps 228-504
285-307PF00096Zinc finger, C2H2 typeoverlaps 228-504
313-335PF00096Zinc finger, C2H2 typeoverlaps 228-504
341-363PF00096Zinc finger, C2H2 typeoverlaps 228-504
384-408PF13465Zinc-finger double domainoverlaps 228-504
425-447PF00096Zinc finger, C2H2 typeoverlaps 228-504
453-475PF00096Zinc finger, C2H2 typeoverlaps 228-504
481-503PF00096Zinc finger, C2H2 typeoverlaps 228-504
509-531PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
537-559PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
565-587PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
593-615PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions